Mercurial > repos > iuc > package_reprof_1_0_1

diff tool_dependencies.xml @ 0:c391423260a2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_reprof_1_0_1 commit cc30e84dcc309a93f49f75250aa3344f926cee5e-dirty
author iuc
date Mon, 30 Nov 2015 20:08:35 -0500
parents
children a7ea224db803
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Nov 30 20:08:35 2015 -0500
@@ -0,0 +1,56 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="perl" version="5.18.1">
+        <repository changeset_revision="2590d4683481" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="fann" version="2.2.0">
+        <repository changeset_revision="28d4ebb94540" name="package_fann_2_2_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="reprof" version="1.0.1">
+        <install version="1.0">
+            <actions>
+                <action sha256sum="e77d41b4c19efe050d71e2ae95c1752da6cf083ac3a649cb4e8bbfdefe23264d" type="download_by_url">
+                    https://depot.galaxyproject.org/software/reprof/reprof_1.0.1_src_all.zip
+                </action>
+
+                <action type="setup_perl_environment">
+                    <repository changeset_revision="2590d4683481" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="perl" version="5.18.1" />
+                    </repository>
+                    <repository changeset_revision="11045607d36d" name="package_perl_ai_fann_0_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="perl_ai_fann" version="0.10" />
+                    </repository>
+                </action>
+
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="28d4ebb94540" name="package_fann_2_2_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="fann" version="2.2.0" />
+                    </repository>
+                </action>
+
+                <action type="shell_command">
+                    autoreconf -vif &amp;&amp;
+                    cd lib/RG &amp;&amp;
+                    make Reprof.pm &amp;&amp;
+                    cd ../../ &amp;&amp;
+                    ./configure --prefix=$INSTALL_DIR
+                    make &amp;&amp;
+                    make install &amp;&amp;
+                    ./Build
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib/perl5</environment_variable>
+                    <environment_variable action="set_to" name="REPROF_MODEL_DIR">$INSTALL_DIR/share/reprof</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+Fast Artificial Neural Network (FANN) Library is a free open source neural
+network library, which implements multilayer artificial neural networks in C
+with support for both fully connected and sparsely connected networks.
+
+
+FANN requires gcc
+        </readme>
+    </package>
+</tool_dependency>