Mercurial > repos > iuc > package_psort_3_0_3
annotate tool_dependencies.xml @ 4:c3ebeaf31d1d draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_psort_3_0_3 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
| author | iuc |
|---|---|
| date | Tue, 22 Dec 2015 19:29:06 -0500 |
| parents | b847990dc2fa |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="perl" version="5.18.1"> | |
|
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c3ebeaf31d1d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_psort_3_0_3 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
parents:
3
diff
changeset
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4 <repository changeset_revision="d5193a5f6203" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 0 | 5 </package> |
| 2 | 6 <package name="legacy_blast" version="2.2.6"> |
| 7 <repository changeset_revision="f55a0c6d1484" name="package_legacy_blast_2_2_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 8 </package> | |
| 9 | |
| 0 | 10 <package name="psort" version="3.0.3"> |
| 11 <install version="1.0"> | |
| 12 <actions> | |
| 13 <action type="download_by_url">http://www.psort.org/download/libpsortb-1.0.tar.gz</action> | |
| 14 <action type="autoconf" /> | |
| 15 | |
| 16 <action type="download_by_url">ftp://lausanne.isb-sib.ch/pub/software/unix/pftools/pft2.3/pft2.3.5.d.tar.gz</action> | |
| 17 <action type="shell_command">make</action> | |
| 18 <action type="move_directory_files"> | |
| 19 <source_directory>.</source_directory> | |
| 20 <destination_directory>$INSTALL_DIR/pft</destination_directory> | |
| 21 </action> | |
| 1 | 22 <!-- install blastall --> |
| 2 | 23 <!-- populate the environment variables from the dependend repos --> |
| 24 <action type="set_environment_for_install"> | |
| 25 <repository changeset_revision="f55a0c6d1484" name="package_legacy_blast_2_2_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> | |
| 26 <package name="legacy_blast" version="2.2.6" /> | |
| 27 </repository> | |
| 1 | 28 </action> |
| 0 | 29 |
| 30 <action type="set_environment"> | |
| 31 <environment_variable action="set_to" name="LIBPSORTB_ROOT_PATH">$INSTALL_DIR</environment_variable> | |
| 32 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
| 33 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/pft</environment_variable> | |
| 34 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable> | |
| 35 </action> | |
| 36 | |
| 37 <action type="setup_perl_environment"> | |
|
4
c3ebeaf31d1d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_psort_3_0_3 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
parents:
3
diff
changeset
|
38 <repository changeset_revision="d5193a5f6203" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 0 | 39 <package name="perl" version="5.18.1" /> |
| 40 </repository> | |
| 41 <!-- allow downloading and installing an Perl package from cpan.org--> | |
| 42 <package>http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.922.tar.gz</package> | |
| 43 <package>http://www.psort.org/download/bio-tools-psort-all.3.0.3.tar.gz</package> | |
| 44 </action> | |
| 45 </actions> | |
| 46 </install> | |
| 47 <readme> | |
| 48 http://www.psort.org/downloads/index.html | |
| 49 </readme> | |
| 50 </package> | |
| 51 </tool_dependency> |