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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="perl" version="5.18.1">
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4 <repository changeset_revision="f6efd799dc70" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="psort" version="3.0.3">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">http://www.psort.org/download/libpsortb-1.0.tar.gz</action>
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10 <action type="autoconf" />
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11
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12 <action type="download_by_url">ftp://lausanne.isb-sib.ch/pub/software/unix/pftools/pft2.3/pft2.3.5.d.tar.gz</action>
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13 <action type="shell_command">make</action>
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14 <action type="move_directory_files">
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15 <source_directory>.</source_directory>
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16 <destination_directory>$INSTALL_DIR/pft</destination_directory>
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17 </action>
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1
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18 <!-- install blastall -->
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19 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/2.2.6/blast-2.2.6-ia64-linux.tar.gz</action>
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20 <action type="move_directory_files">
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21 <source_directory>.</source_directory>
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22 <destination_directory>$INSTALL_DIR/bin/</destination_directory>
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23 </action>
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0
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24
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25 <action type="set_environment">
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26 <environment_variable action="set_to" name="LIBPSORTB_ROOT_PATH">$INSTALL_DIR</environment_variable>
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27 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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28 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/pft</environment_variable>
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29 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
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30 </action>
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31
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32 <action type="setup_perl_environment">
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33 <repository changeset_revision="f6efd799dc70" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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34 <package name="perl" version="5.18.1" />
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35 </repository>
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36 <!-- allow downloading and installing an Perl package from cpan.org-->
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37 <package>http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.922.tar.gz</package>
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38 <package>http://www.psort.org/download/bio-tools-psort-all.3.0.3.tar.gz</package>
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39 </action>
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40 </actions>
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41 </install>
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42 <readme>
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43 http://www.psort.org/downloads/index.html
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44 </readme>
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45 </package>
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46 </tool_dependency>
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