Mercurial > repos > iuc > package_psort_3_0_3
diff tool_dependencies.xml @ 0:ad9694939206 draft
Uploaded
| author | iuc |
|---|---|
| date | Mon, 20 Apr 2015 11:10:45 -0400 |
| parents | |
| children | 4689cc976d7c |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Apr 20 11:10:45 2015 -0400 @@ -0,0 +1,40 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="perl" version="5.18.1"> + <repository changeset_revision="f6efd799dc70" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="psort" version="3.0.3"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://www.psort.org/download/libpsortb-1.0.tar.gz</action> + <action type="autoconf" /> + + <action type="download_by_url">ftp://lausanne.isb-sib.ch/pub/software/unix/pftools/pft2.3/pft2.3.5.d.tar.gz</action> + <action type="shell_command">make</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR/pft</destination_directory> + </action> + + <action type="set_environment"> + <environment_variable action="set_to" name="LIBPSORTB_ROOT_PATH">$INSTALL_DIR</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/pft</environment_variable> + <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable> + </action> + + <action type="setup_perl_environment"> + <repository changeset_revision="f6efd799dc70" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="perl" version="5.18.1" /> + </repository> + <!-- allow downloading and installing an Perl package from cpan.org--> + <package>http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.922.tar.gz</package> + <package>http://www.psort.org/download/bio-tools-psort-all.3.0.3.tar.gz</package> + </action> + </actions> + </install> + <readme> + http://www.psort.org/downloads/index.html + </readme> + </package> +</tool_dependency>
