Mercurial > repos > iuc > package_bowtie_2_2_5

annotate tool_dependencies.xml @ 3:f5582ac5ba3c draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 97a064489364118d108b0dd2cfb4d9bc53080837
author iuc
date Thu, 19 Nov 2015 13:04:35 -0500
parents e627be2bba58
children
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185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
iuc
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1 <?xml version="1.0"?>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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2 <tool_dependency>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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3 <package name="bowtie2" version="2.2.5">
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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4 <install version="1.0">
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
iuc
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5 <actions_group>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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6 <actions os="linux" architecture="x86_64">
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f3b301780e36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 5c84ce50aff06cc7a1bad32557d9ca37bbc2afc0
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7 <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/bowtie2/bowtie2-2.2.5-Linux-x86_64.tar.gz</action>
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185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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8 <action type="move_directory_files">
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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9 <source_directory>.</source_directory>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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10 <destination_directory>$INSTALL_DIR</destination_directory>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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11 </action>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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12 </actions>
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f5582ac5ba3c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 97a064489364118d108b0dd2cfb4d9bc53080837
iuc
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13 <actions os="darwin" architecture="x86_64">
f5582ac5ba3c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 97a064489364118d108b0dd2cfb4d9bc53080837
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14 <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.5/bowtie2-2.2.5-macos-x86_64.zip</action>
f5582ac5ba3c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 97a064489364118d108b0dd2cfb4d9bc53080837
iuc
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15 <action type="move_directory_files">
f5582ac5ba3c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 97a064489364118d108b0dd2cfb4d9bc53080837
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16 <source_directory>.</source_directory>
f5582ac5ba3c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 97a064489364118d108b0dd2cfb4d9bc53080837
iuc
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17 <destination_directory>$INSTALL_DIR</destination_directory>
f5582ac5ba3c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 97a064489364118d108b0dd2cfb4d9bc53080837
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18 </action>
f5582ac5ba3c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 97a064489364118d108b0dd2cfb4d9bc53080837
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19 </actions>
2
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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20 <actions>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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21 <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.5/bowtie2-2.2.5-source.zip</action>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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22 <action type="shell_command">make</action>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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23 <action type="move_file">
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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24 <source>bowtie2</source>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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25 <destination>$INSTALL_DIR/bin</destination>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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26 </action>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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27 <action type="move_file">
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
iuc
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28 <source>bowtie2-build</source>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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29 <destination>$INSTALL_DIR/bin</destination>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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30 </action>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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31 <action type="move_file">
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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32 <source>bowtie2-inspect</source>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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33 <destination>$INSTALL_DIR/bin</destination>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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34 </action>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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35 <action type="move_file">
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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36 <source>bowtie</source>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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37 <destination>$INSTALL_DIR/bin</destination>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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38 </action>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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39 <action type="move_file">
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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40 <source>bowtie-build</source>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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41 <destination>$INSTALL_DIR/bin</destination>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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42 </action>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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43 <action type="move_file">
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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44 <source>bowtie-inspect</source>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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45 <destination>$INSTALL_DIR/bin</destination>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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46 </action>
e627be2bba58 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
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47 </actions>
0
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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48 <action type="set_environment">
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49 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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50 </action>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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51 </actions_group>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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52 </install>
185ac8aa311e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 35cfc3a25d68721360ad6ca18329f036577f1abc
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53 <readme></readme>
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54 </package>
1
f3b301780e36 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit 5c84ce50aff06cc7a1bad32557d9ca37bbc2afc0
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55 </tool_dependency>