Mercurial > repos > iuc > gff_to_prot

annotate convert_gff.xml @ 11:5738ec3f9341 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 0daaffac75df549583b6d834113608c2dbacb1d3
author iuc
date Tue, 27 May 2025 19:59:14 +0000
parents 179ee659a3ee
children
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f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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1 <?xml version="1.0"?>
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179ee659a3ee "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit ba889fa4fff4929637bf6aee1047e1426ee3a2f7"
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2 <tool id="gff_to_prot" name="Convert GFF3" version="@TOOL_VERSION@+galaxy0">
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3 <description>to prot_table for TRANSIT</description>
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4 <expand macro="bio_tools"/>
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5 <macros>
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6 <import>macros.xml</import>
74e9ab4a4c05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 73c6b2baf9dda26c6809a4f36582f7cbdb161ea1
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7 </macros>
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8 <expand macro="requirements" />
a1b3d615f8bf "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 3a3bb179f4f3c99b25ef082996720c62aedb6200"
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9 <command detect_errors="exit_code">transit convert gff_to_prot_table '$input' '$output'</command>
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10 <inputs>
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11 <param name="input" type="data" format="gff3" label="GenBank GFF file" />
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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12 </inputs>
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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13 <outputs>
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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14 <data name="output" format="tabular" />
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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15 </outputs>
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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16 <tests>
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17 <test>
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18 <param name="input" ftype="gff3" value="gff_to_prot-in1.gff3" />
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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19 <output name="output" file="gff_to_prot-out1.txt" />
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20 </test>
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21 </tests>
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23 <help>
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24 <![CDATA[
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25 .. class:: infomark
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28 **What it does**
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30 -------------------
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32 Convert Gff3 files coming from Genbank in prot_table file that can be used as an input for TRANSIT tools.
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34 ]]></help>
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35 <expand macro="citations" />
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37 </tool>