Mercurial > repos > iuc > gff_to_prot

annotate convert_gff.xml @ 8:a1b3d615f8bf draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 3a3bb179f4f3c99b25ef082996720c62aedb6200"
author iuc
date Tue, 28 Jan 2020 10:34:55 +0000
parents 74e9ab4a4c05
children 083efa205ca3
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f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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1 <?xml version="1.0"?>
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a1b3d615f8bf "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 3a3bb179f4f3c99b25ef082996720c62aedb6200"
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2 <tool id="gff_to_prot" name="Convert GFF3" version="@VERSION@+galaxy0">
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f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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3 <description>to prot_table for TRANSIT</description>
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4 <macros>
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5 <import>macros.xml</import>
74e9ab4a4c05 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 73c6b2baf9dda26c6809a4f36582f7cbdb161ea1
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6 </macros>
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a1b3d615f8bf "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 3a3bb179f4f3c99b25ef082996720c62aedb6200"
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7 <expand macro="requirements" />
a1b3d615f8bf "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 3a3bb179f4f3c99b25ef082996720c62aedb6200"
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8 <command detect_errors="exit_code">transit convert gff_to_prot_table '$input' '$output'</command>
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f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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9 <inputs>
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10 <param name="input" type="data" format="gff3" label="GenBank GFF file" />
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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11 </inputs>
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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12 <outputs>
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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13 <data name="output" format="tabular" />
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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14 </outputs>
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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15 <tests>
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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16 <test>
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17 <param name="input" ftype="gff3" value="gff_to_prot-in1.gff3" />
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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18 <output name="output" file="gff_to_prot-out1.txt" />
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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19 </test>
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20 </tests>
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22 <help>
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23 <![CDATA[
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24 .. class:: infomark
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27 **What it does**
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29 -------------------
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31 Convert Gff3 files coming from Genbank in prot_table file that can be used as an input for TRANSIT tools.
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33 ]]></help>
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34 <expand macro="citations" />
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36 </tool>