Mercurial > repos > iuc > gff_to_prot

annotate convert_gff.xml @ 3:a6aa24fe733c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
author dave
date Wed, 03 Apr 2019 14:44:00 -0400
parents 5b78f251c69f
children 74e9ab4a4c05
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f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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1 <?xml version="1.0"?>
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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2 <tool id="gff_to_prot" name="Convert GFF3" version="1.0.0">
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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3 <description>to prot_table for TRANSIT</description>
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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4 <command detect_errors="exit_code">$__tool_directory__/gff_to_prot.py '$input' '$output'</command>
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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5 <inputs>
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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6 <param name="input" type="data" format="gff3" label="GenBank GFF file" />
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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7 </inputs>
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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8 <outputs>
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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9 <data name="output" format="tabular" />
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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10 </outputs>
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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11 <tests>
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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12 <test>
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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13 <param name="input" ftype="gff3" value="gff_to_prot-in1.gff3" />
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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14 <output name="output" file="gff_to_prot-out1.txt" />
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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15 </test>
f6c407e41a33 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
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16 </tests>
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18 <help>
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a6aa24fe733c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
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a6aa24fe733c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
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21 <![CDATA[
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22 .. class:: infomark
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25 **What it does**
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27 -------------------
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29 Convert Gff3 files coming from Genbank in prot_table file that can be used as an input for TRANSIT tools.
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31 ]]></help>
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33 </tool>