Mercurial > repos > iuc > gff_to_prot

comparison convert_gff.xml @ 3:a6aa24fe733c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
author dave
date Wed, 03 Apr 2019 14:44:00 -0400
parents 5b78f251c69f
children 74e9ab4a4c05
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2:5b78f251c69f 3:a6aa24fe733c
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="gff_to_prot" name="Convert GFF3" version="1.0.0"> 2 <tool id="gff_to_prot" name="Convert GFF3" version="1.0.0">
3 <description>to prot_table for TRANSIT</description> 3 <description>to prot_table for TRANSIT</description>
4 <macros>
5 <import>macros.xml</import>
6 </macros>
7 <command detect_errors="exit_code">$__tool_directory__/gff_to_prot.py '$input' '$output'</command> 4 <command detect_errors="exit_code">$__tool_directory__/gff_to_prot.py '$input' '$output'</command>
8 <inputs> 5 <inputs>
9 <param name="input" type="data" format="gff3" label="GenBank GFF file" /> 6 <param name="input" type="data" format="gff3" label="GenBank GFF file" />
10 </inputs> 7 </inputs>
11 <outputs> 8 <outputs>
17 <output name="output" file="gff_to_prot-out1.txt" /> 14 <output name="output" file="gff_to_prot-out1.txt" />
18 </test> 15 </test>
19 </tests> 16 </tests>
20 17
21 <help> 18 <help>
22 <![CDATA[
23 .. class:: infomark
24 19
25 20
26 **What it does** 21 <![CDATA[
22 .. class:: infomark
27 23
28 -------------------
29 24
30 Convert Gff3 files coming from Genbank in prot_table file that can be used as an input for TRANSIT tools. 25 **What it does**
31 26
32 ]]></help> 27 -------------------
33 <expand macro="citations" /> 28
29 Convert Gff3 files coming from Genbank in prot_table file that can be used as an input for TRANSIT tools.
30
31 ]]></help>
34 32
35 </tool> 33 </tool>