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1 <?xml version="1.0"?>
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2 <tool_dependency>
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1
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3 <package name="cmake" version="3.2.3">
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4
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4 <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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1
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5 </package>
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6 <package name="icqsol" version="1.0">
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7 <install version="1.0">
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8 <actions_group>
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1
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9 <actions architecture="x86_64" os="linux">
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0
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10 <!-- Install and compile Anaconda 2.3.0 which provides Python 2.7.10 -->
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1
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11 <action target_filename="Anaconda-2.3.0-Linux-x86_64.sh" type="download_file">https://3230d63b5fc54e62148e-c95ac804525aac4b6dba79b00b39d1d3.ssl.cf1.rackcdn.com/Anaconda-2.3.0-Linux-x86_64.sh</action>
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3
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12
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1
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13 <action type="set_environment_for_install">
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4
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14 <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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1
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15 <package name="cmake" version="3.2.3" />
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16 </repository>
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17 </action>
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18
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16
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19 <action type="shell_command">bash Anaconda-2.3.0-Linux-x86_64.sh -b -f -p $INSTALL_DIR/anaconda</action>
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20
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14
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21 <!-- Install VTK 6.3.0 into the above Python -->
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4
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22 <action type="make_directory">$TMP_WORK_DIR/vtk</action>
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23 <action type="change_directory">$TMP_WORK_DIR/vtk</action>
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14
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24 <action target_filename="VTK-6.3.0.tar.gz" type="download_file">http://www.vtk.org/files/release/6.3/VTK-6.3.0.tar.gz</action>
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25 <action type="shell_command">tar xfvz VTK-6.3.0.tar.gz</action>
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26 <action type="change_directory">VTK-6.3.0</action>
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27 <action type="shell_command">
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28
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16
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29 export PATH=$INSTALL_DIR/anaconda/bin:$PATH &&
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30 export PYTHONPATH=$INSTALL_DIR/anaconda:$PYTHONPATH &&
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31 export PKG_CONFIG_PATH=$INSTALL_DIR/anaconda/lib/pkgconfig:$PKG_CONFIG_PATH &&
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32 cmake \
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33 -DCMAKE_BUILD_TYPE:STRING=Release \
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15
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34 -DCMAKE_INSTALL_PREFIX:PATH=$INSTALL_DIR/vtk \
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4
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35 -DVTK_WRAP_PYTHON:BOOL=ON \
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36 -DVTK_Group_StandAlone:BOOL=OFF \
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37 -DVTK_Group_Rendering:BOOL=OFF \
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38 -DModule_vtkCommonColor:BOOL=ON \
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39 -DModule_vtkCommonComputationalGeometry:BOOL=ON \
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40 -DModule_vtkCommonDataModel:BOOL=ON \
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41 -DModule_vtkCommonExecutionModel:BOOL=ON \
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42 -DModule_vtkCommonMath:BOOL=ON \
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43 -DModule_vtkCommonMisc:BOOL=ON \
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44 -DModule_vtkCommonSystem:BOOL=ON \
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45 -DModule_vtkCommonTransforms:BOOL=ON \
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46 -DModule_vtkFiltersCore:BOOL=ON \
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47 -DModule_vtkFiltersExtraction:BOOL=ON \
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48 -DModule_vtkFiltersGeneral:BOOL=ON \
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49 -DModule_vtkFiltersGeneric:BOOL=ON \
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50 -DModule_vtkFiltersGeometry:BOOL=ON \
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51 -DModule_vtkFiltersPython:BOOL=ON \
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52 -DModule_vtkImagingHybrid:BOOL=ON \
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53 -DModule_vtkIOCore:BOOL=ON \
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54 -DModule_vtkIOGeometry:BOOL=ON \
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55 -DModule_vtkIOLegacy:BOOL=ON \
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56 -DModule_vtkWrappingPythonCore:BOOL=ON \
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57 -DModule_vtkIOPLY:BOOL=ON \
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16
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58 -DVTK_INSTALL_PYTHON_MODULE_DIR:PATH=$INSTALL_DIR/anaconda/lib/python2.7/site-packages \
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59 -DPYTHON_EXECUTABLE:PATH=$INSTALL_DIR/anaconda/bin/python \
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60 -DPYTHON_LIBRARY:PATH=$INSTALL_DIR/anaconda/lib/libpython2.7.so \
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61 -DPYTHON_INCLUDE_DIR:PATH=$INSTALL_DIR/anaconda/include/python2.7 . &&
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17
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62 make &&
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63 make install
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64
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65 </action>
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66
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67 <!-- Install and compile icqsol version 1.0 as a package in the above Python -->
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68 <action type="make_directory">$TMP_WORK_DIR/icqsol</action>
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69 <action type="change_directory">$TMP_WORK_DIR/icqsol</action>
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70 <action type="shell_command">git clone https://github.com/pletzer/icqsol.git</action>
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71 <action type="change_directory">icqsol</action>
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72 <action type="shell_command">
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1
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73
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16
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74 export PATH=$INSTALL_DIR/anaconda/bin:$INSTALL_DIR/vtk/bin:$PATH &&
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14
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75 export VTK_INCLUDE_DIR=$INSTALL_DIR/vtk/include/vtk-6.3 &&
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16
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76 export C_INCLUDE_PATH=$INSTALL_DIR/vtk/include/vtk-6.3 &&
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77 export CPLUS_INCLUDE_PATH=$INSTALL_DIR/vtk/include/vtk-6.3 &&
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5
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78 export VTK_LIBRARY_DIR=$INSTALL_DIR/vtk/lib &&
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16
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79 export LD_LIBRARY_PATH=$INSTALL_DIR/vtk/lib &&
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20
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80 $INSTALL_DIR/anaconda/bin/python setup.py develop --prefix=$INSTALL_DIR/anaconda &&
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16
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81 $INSTALL_DIR/anaconda/bin/python setup.py install --prefix=$INSTALL_DIR/anaconda
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1
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82
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0
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83 </action>
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84
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85 <action type="set_environment">
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86 <!--
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87 Only the PATH environment variable needs to be modified for an Anaconda environment so that it gets
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88 the right Python from the environment bin directory.
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89 -->
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90 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/anaconda/bin</environment_variable>
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91 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/vtk/lib</environment_variable>
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0
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92 <environment_variable action="set_to" name="ICQSOL_ROOT_DIR">$INSTALL_DIR</environment_variable>
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93 </action>
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94 </actions>
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95
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1
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96 <actions architecture="x86_64" os="darwin">
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0
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97 <!-- Install and compile Anaconda 2.3.0 which provides Python 2.7.10 -->
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1
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98 <action target_filename="Anaconda-2.3.0-MacOSX-x86_64.sh" type="download_file">https://3230d63b5fc54e62148e-c95ac804525aac4b6dba79b00b39d1d3.ssl.cf1.rackcdn.com/Anaconda-2.3.0-MacOSX-x86_64.sh</action>
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3
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99
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2
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100 <action type="set_environment_for_install">
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4
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101 <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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2
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102 <package name="cmake" version="3.2.3" />
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103 </repository>
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104 </action>
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3
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105
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16
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106 <action type="shell_command">bash Anaconda-2.3.0-MacOSX-x86_64.sh -b -f -p $INSTALL_DIR/anaconda</action>
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0
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107
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14
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108 <!-- Install and compile VTK 6.3.0 as a package in the above Python -->
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4
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109 <action type="make_directory">$TMP_WORK_DIR/vtk</action>
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110 <action type="change_directory">$TMP_WORK_DIR/vtk</action>
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14
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111 <action target_filename="VTK-6.3.0.tar.gz" type="download_file">http://www.vtk.org/files/release/6.3/VTK-6.3.0.tar.gz</action>
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112 <action type="shell_command">tar xfvz VTK-6.3.0.tar.gz</action>
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113 <action type="change_directory">VTK-6.3.0</action>
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0
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114 <action type="shell_command">
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1
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115
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16
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116 export PATH=$INSTALL_DIR/anaconda/bin:$PATH &&
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117 export PKG_CONFIG_PATH=$INSTALL_DIR/anaconda/lib/pkgconfig:$PKG_CONFIG_PATH &&
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118 cmake \
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119 -DCMAKE_BUILD_TYPE:STRING=Release \
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16
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120 -DCMAKE_INSTALL_PREFIX:PATH=$INSTALL_DIR/vtk \
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4
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121 -DVTK_WRAP_PYTHON:BOOL=ON \
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122 -DVTK_Group_StandAlone:BOOL=OFF \
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123 -DVTK_Group_Rendering:BOOL=OFF \
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124 -DModule_vtkCommonColor:BOOL=ON \
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125 -DModule_vtkCommonComputationalGeometry:BOOL=ON \
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126 -DModule_vtkCommonDataModel:BOOL=ON \
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127 -DModule_vtkCommonExecutionModel:BOOL=ON \
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128 -DModule_vtkCommonMath:BOOL=ON \
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129 -DModule_vtkCommonMisc:BOOL=ON \
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130 -DModule_vtkCommonSystem:BOOL=ON \
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131 -DModule_vtkCommonTransforms:BOOL=ON \
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132 -DModule_vtkFiltersCore:BOOL=ON \
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133 -DModule_vtkFiltersExtraction:BOOL=ON \
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134 -DModule_vtkFiltersGeneral:BOOL=ON \
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135 -DModule_vtkFiltersGeneric:BOOL=ON \
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136 -DModule_vtkFiltersGeometry:BOOL=ON \
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137 -DModule_vtkFiltersPython:BOOL=ON \
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138 -DModule_vtkImagingHybrid:BOOL=ON \
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139 -DModule_vtkIOCore:BOOL=ON \
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140 -DModule_vtkIOGeometry:BOOL=ON \
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141 -DModule_vtkIOLegacy:BOOL=ON \
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142 -DModule_vtkWrappingPythonCore:BOOL=ON \
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143 -DModule_vtkIOPLY:BOOL=ON \
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16
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144 -DVTK_INSTALL_PYTHON_MODULE_DIR:PATH=$INSTALL_DIR/anaconda/lib/python2.7/site-packages \
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145 -DPYTHON_EXECUTABLE:PATH=$INSTALL_DIR/anaconda/bin/python \
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146 -DPYTHON_LIBRARY:PATH=$INSTALL_DIR/anaconda/lib/libpython2.7.dylib \
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147 -DPYTHON_INCLUDE_DIR:PATH=$INSTALL_DIR/anaconda/include/python2.7 . &&
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22
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148 make -j 8 &&
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149 make install
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1
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150
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0
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151 </action>
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152
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153 <!-- Install and compile icqsol version 1.0 as a package in the above Python -->
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154 <action type="make_directory">$TMP_WORK_DIR/icqsol</action>
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155 <action type="change_directory">$TMP_WORK_DIR/icqsol</action>
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156 <action type="shell_command">git clone https://github.com/pletzer/icqsol.git</action>
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157 <action type="change_directory">icqsol</action>
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158 <action type="shell_command">
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1
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159
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21
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160 export PATH=$INSTALL_DIR/anaconda/bin:$PATH &&
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22
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161 $INSTALL_DIR/anaconda/bin/python setup.py develop --prefix=$INSTALL_DIR/anaconda &&
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162 $INSTALL_DIR/anaconda/bin/python setup.py install --prefix=$INSTALL_DIR/anaconda
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1
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163
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0
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164 </action>
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165
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166 <action type="set_environment">
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167 <!--
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168 Only the PATH environment variable needs to be modified for an Anaconda environment so that it gets
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169 the right Python from the environment bin directory. The way Anaconda environments work is that they
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170 hard link everything that is installed into the environment. For all intents and purposes, this means
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171 that each environment is a completely separate installation of Python and all the packages. By using
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172 hard links, this is done efficiently. Thus, there's no need to mess with PYTHONPATH because the Python
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173 binary in the environment already searches the site-packages in the environment, and the lib of the
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174 environment, and so on.
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175 -->
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176 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/anaconda/bin</environment_variable>
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177 <environment_variable action="prepend_to" name="DYLD_LIBRARY_PATH">$INSTALL_DIR/vtk/lib</environment_variable>
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178 <environment_variable action="set_to" name="ICQSOL_ROOT_DIR">$INSTALL_DIR</environment_variable>
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179 </action>
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180 </actions>
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181 </actions_group>
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182 </install>
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183 <readme>
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1
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184
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185 This installation recipe installs the Anaconda version 2.3.0 of the Python programming language
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186 version 2.7.10. Anaconda is a completely free Python distribution (including for commercial use
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187 and redistribution). It includes more than 300 of the most popular Python packages for science,
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188 math, engineering, and data analysis. This list of packages is available at
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189 http://docs.continuum.io/anaconda/pkg-docs.
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190
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191 1) VTK version 6.3.0
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0
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192
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193 The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D
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194 computer graphics, modeling, image processing, volume rendering, scientific visualization, and
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195 information visualization. VTK also includes ancillary support for 3D interaction widgets, two-
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196 and three-dimensional annotation, and parallel computing. At its core, VTK is implemented as a
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197 C++ toolkit, requiring users to build applications by combining various objects into an application.
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198 The system also supports automated wrapping of the C++ core into Python, Java, and Tcl, so VTK
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199 applications may also be written using these interpreted programming languages.
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200
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201 VTK employs Kitware’s Quality Software Process (CMake, CTest, CDash, and CPack) to build, test,
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202 and package the system, making VTK a cross-platform application dependent on test-driven development
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203 and extreme programming, and enabling the application to produce high-quality, robust code. VTK is
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204 used world-wide in commercial applications, as well as in research and development. It is the basis
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205 for many advanced visualization applications such as ParaView, VisIt, VisTrails, Slicer, MayaVi, and
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206 OsiriX.
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207
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208 3) Pycsg version 0.3.0
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209
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210 Constructive Solid Geometry (CSG) is a modeling technique that uses Boolean operations like union and
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211 intersection to combine 3D solids. This library implements CSG operations on meshes elegantly and
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212 concisely using BSP trees, and is meant to serve as an easily understandable implementation of the
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213 algorithm. All edge cases involving overlapping coplanar polygons in both solids are correctly handled.
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214
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215 4) Pytriangle version 1.0
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216
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217 Pytriangle is a python interface to the 2D triangulation program originally written by Jonathan Richard Shewchuck
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218
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219 5) Icqsol version 1.0
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220
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221 Icqsol is a collection of tools for constructing and solving partial differential equations.
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1
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222
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0
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223
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224 </readme>
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225 </package>
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226 </tool_dependency>
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