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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="R" version="3.1.0">
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4 <repository changeset_revision="0:a6cc7706ea14" name="package_r_3_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="DESeq2biomaRt" version="1.0">
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7 <install version="1.0">
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8 <actions>
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9 <action type="set_environment_for_install">
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10 <repository changeset_revision="0:a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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11 <package name="R" version="3.1.0" />
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12 </repository>
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13 </action>
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14 <action type="shell_command">R CMD BATCH packages.R</action>
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15 <action type="shell_command">echo "export PATH=$PATH" > $INSTALL_DIR/env.sh </action>
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16 <action type="shell_command">chmod 755 $INSTALL_DIR/env.sh </action>
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17 </actions>
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18 </install>
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19 <readme>
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20 </readme>
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21 </package>
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22 </tool_dependency>
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