Mercurial > repos > eganrol > rnaseqdataannotation

comparison RNAseqDataAnnotation/tool_dependencies.xml @ 0:de3907c85546 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author eganrol
date Wed, 19 Nov 2014 11:52:45 -0500
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:de3907c85546
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="R" version="3.1.0">
4 <repository changeset_revision="0:a6cc7706ea14" name="package_r_3_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="DESeq2biomaRt" version="1.0">
7 <install version="1.0">
8 <actions>
9 <action type="set_environment_for_install">
10 <repository changeset_revision="0:a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
11 <package name="R" version="3.1.0" />
12 </repository>
13 </action>
14 <action type="shell_command">R CMD BATCH packages.R</action>
15 <action type="shell_command">echo "export PATH=$PATH" &gt; $INSTALL_DIR/env.sh </action>
16 <action type="shell_command">chmod 755 $INSTALL_DIR/env.sh </action>
17 </actions>
18 </install>
19 <readme>
20 </readme>
21 </package>
22 </tool_dependency>