Mercurial > repos > eganrol > rnaseqdataannotation

view RNAseqDataAnnotation/tool_dependencies.xml @ 0:de3907c85546 draft

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author eganrol
date Wed, 19 Nov 2014 11:52:45 -0500
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<?xml version="1.0"?>
<tool_dependency>
    <package name="R" version="3.1.0">
    <repository changeset_revision="0:a6cc7706ea14" name="package_r_3_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="DESeq2biomaRt" version="1.0">
        <install version="1.0">
            <actions>
                <action type="set_environment_for_install">
					<repository changeset_revision="0:a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
						<package name="R" version="3.1.0" />
					</repository>
                </action>
                <action type="shell_command">R CMD BATCH packages.R</action>
                <action type="shell_command">echo "export PATH=$PATH" &gt; $INSTALL_DIR/env.sh </action>
			    <action type="shell_command">chmod 755 $INSTALL_DIR/env.sh </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>