Mercurial > repos > dfornika > assign_clades

annotate assign_clades.xml @ 0:2e262bbd193f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
author dfornika
date Wed, 25 Oct 2017 20:54:06 -0400
parents
children 5d4104c3481a
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
1 <tool id="assign_clades" name="Assign Clades" version="0.1.0">
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
2 <requirements>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
3 <requirement type="package" version="0.0.0">assign_clades</requirement>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
4 </requirements>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
5 <command detect_errors="exit_code"><![CDATA[
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
6 python
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
7 $__tool_directory__/assign_clades.py
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
8 '$input_fasta'
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
9 '$clade_definitions'
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
10 '$output_file'
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
11 ]]></command>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
12 <inputs>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
13 <param name="input_fasta" format="fasta" type="data" />
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
14 <param name="clade_definitions" format="csv" type="data" />
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
15 </inputs>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
16 <outputs>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
17 <data name="output_file" format="fasta"/>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
18 </outputs>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
19 <tests>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
20 <test>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
21 <param name="input_fasta" value="input_fasta.fasta" />
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
22 <param name="clade_definitions" value="clades.csv" />
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
23 <output name="output_file" value="output.fasta" />
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
24 </test>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
25 </tests>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
26 <help><![CDATA[
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
27 ]]></help>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
28 <citations>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
29 <citation type="doi"></citation>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
30 </citations>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
parents:
diff changeset
31 </tool>