Mercurial > repos > dfornika > assign_clades

diff assign_clades.xml @ 0:2e262bbd193f draft

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planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
author dfornika
date Wed, 25 Oct 2017 20:54:06 -0400
parents
children 5d4104c3481a
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/assign_clades.xml	Wed Oct 25 20:54:06 2017 -0400
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+<tool id="assign_clades" name="Assign Clades" version="0.1.0">
+  <requirements>
+    <requirement type="package" version="0.0.0">assign_clades</requirement>
+  </requirements>
+  <command detect_errors="exit_code"><![CDATA[
+    python
+    $__tool_directory__/assign_clades.py
+    '$input_fasta'
+    '$clade_definitions'
+    '$output_file'
+  ]]></command>
+  <inputs>
+    <param name="input_fasta" format="fasta" type="data" />
+    <param name="clade_definitions" format="csv" type="data" />
+  </inputs>
+  <outputs>
+    <data name="output_file" format="fasta"/>
+  </outputs>
+  <tests>
+    <test>
+      <param name="input_fasta" value="input_fasta.fasta" />
+      <param name="clade_definitions" value="clades.csv" />
+      <output name="output_file" value="output.fasta" />
+    </test>
+  </tests>
+  <help><![CDATA[
+  ]]></help>
+  <citations>
+    <citation type="doi"></citation>
+  </citations>
+</tool>