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comparison assign_clades.xml @ 0:2e262bbd193f draft

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planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
author dfornika
date Wed, 25 Oct 2017 20:54:06 -0400
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children 5d4104c3481a
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-1:000000000000 0:2e262bbd193f
1 <tool id="assign_clades" name="Assign Clades" version="0.1.0">
2 <requirements>
3 <requirement type="package" version="0.0.0">assign_clades</requirement>
4 </requirements>
5 <command detect_errors="exit_code"><![CDATA[
6 python
7 $__tool_directory__/assign_clades.py
8 '$input_fasta'
9 '$clade_definitions'
10 '$output_file'
11 ]]></command>
12 <inputs>
13 <param name="input_fasta" format="fasta" type="data" />
14 <param name="clade_definitions" format="csv" type="data" />
15 </inputs>
16 <outputs>
17 <data name="output_file" format="fasta"/>
18 </outputs>
19 <tests>
20 <test>
21 <param name="input_fasta" value="input_fasta.fasta" />
22 <param name="clade_definitions" value="clades.csv" />
23 <output name="output_file" value="output.fasta" />
24 </test>
25 </tests>
26 <help><![CDATA[
27 ]]></help>
28 <citations>
29 <citation type="doi"></citation>
30 </citations>
31 </tool>