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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfcommonsamples commit 36e9065027cc7bf721e9d203208477ee88906c57"
author iuc
date Thu, 23 Jan 2020 12:55:14 +0000
parents 976d3b4447cd
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976d3b4447cd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfcommonsamples commit c2af291b241e37e0a55adbc1fc72a9fa37d93582
iuc
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1 <tool id="vcfcommonsamples" name="VCFcommonSamples:" version="@WRAPPER_VERSION@+galaxy0">
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167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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2 <description>Output records belonging to samples common between two datasets</description>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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3 <macros>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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4 <import>macros.xml</import>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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5 </macros>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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6 <expand macro="requirements"/>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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7 <expand macro="stdio" />
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44783e57efa1 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfcommonsamples commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
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8 <command>vcfcommonsamples '${input1}' '${input2}' > '${out_file1}'</command>
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167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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9 <inputs>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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10 <param format="vcf" name="input1" type="data" label="First dataset"/>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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11 <param format="vcf" name="input2" type="data" label="Second dataset"/>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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12 </inputs>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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13 <outputs>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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14 <data format="vcf" name="out_file1" />
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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15 </outputs>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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16 <tests>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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17 <test>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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18 <param name="input1" value="vcflib.vcf"/>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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19 <param name="input2" value="vcfcommonsamples-test1-input2.vcf"/>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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20 <output name="out_file1" file="vcfcommonsamples-test1.vcf"/>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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21 </test>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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22 </tests>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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23 <help>
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167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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25 Outputs each record in the first file, removing samples not present in the second.
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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27 ----
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167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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29 Vcfcommonsamples @IS_PART_OF_VCFLIB@
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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30 </help>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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31 <expand macro="citations" />
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32 </tool>