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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
author devteam
date Thu, 15 Sep 2016 16:03:38 -0400
parents 1af6f51218b6
children 976d3b4447cd
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167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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1 <tool id="vcfcommonsamples" name="VCFcommonSamples:" version="@WRAPPER_VERSION@.0">
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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2 <description>Output records belonging to samples common between two datasets</description>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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3 <macros>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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4 <import>macros.xml</import>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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5 </macros>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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6 <expand macro="requirements"/>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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7 <expand macro="stdio" />
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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8 <command>vcfcommonsamples "${input1}" "${input2}" > "${out_file1}"</command>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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9 <inputs>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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10 <param format="vcf" name="input1" type="data" label="First dataset"/>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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11 <param format="vcf" name="input2" type="data" label="Second dataset"/>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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12 </inputs>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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13 <outputs>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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14 <data format="vcf" name="out_file1" />
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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15 </outputs>
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16 <tests>
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17 <test>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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18 <param name="input1" value="vcflib.vcf"/>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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19 <param name="input2" value="vcfcommonsamples-test1-input2.vcf"/>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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20 <output name="out_file1" file="vcfcommonsamples-test1.vcf"/>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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21 </test>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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22 </tests>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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23 <help>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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25 Outputs each record in the first file, removing samples not present in the second.
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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27 ----
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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29 Vcfcommonsamples @IS_PART_OF_VCFLIB@
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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30 </help>
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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31 <expand macro="citations" />
167d9cf0e88d planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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32 </tool>