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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
author devteam
date Mon, 09 Nov 2015 12:31:04 -0500
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1af6f51218b6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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1 <tool id="vcfcommonsamples" name="VCFcommonSamples:" version="0.0.3">
1af6f51218b6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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2 <description>Output records belonging to samples common between two datasets</description>
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3 <macros>
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4 <import>macros.xml</import>
1af6f51218b6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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5 </macros>
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6 <expand macro="requirements"></expand>
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7 <expand macro="stdio" />
1af6f51218b6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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8 <command>vcfcommonsamples "${input1}" "${input2}" > "${out_file1}"</command>
1af6f51218b6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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9 <inputs>
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10 <param format="vcf" name="input1" type="data" label="First dataset"/>
1af6f51218b6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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11 <param format="vcf" name="input2" type="data" label="Second dataset"/>
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12 </inputs>
1af6f51218b6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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13 <outputs>
1af6f51218b6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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14 <data format="vcf" name="out_file1" />
1af6f51218b6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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15 </outputs>
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16 <tests>
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17 <test>
1af6f51218b6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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18 <param name="input1" value="vcflib.vcf"/>
1af6f51218b6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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19 <param name="input2" value="vcfcommonsamples-test1-input2.vcf"/>
1af6f51218b6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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20 <output name="out_file1" file="vcfcommonsamples-test1.vcf"/>
1af6f51218b6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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21 </test>
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22 </tests>
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23 <help>
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24
1af6f51218b6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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25 Outputs each record in the first file, removing samples not present in the second.
1af6f51218b6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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26
1af6f51218b6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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27 ----
1af6f51218b6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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1af6f51218b6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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29 Vcfcommonsamples @IS_PART_OF_VCFLIB@
1af6f51218b6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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30 </help>
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31 <expand macro="citations" />
1af6f51218b6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
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32 </tool>