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comparison germline/TRGV.fa @ 0:fe4001bdf8d4 draft

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author davidvanzessen
date Tue, 09 Dec 2014 03:55:01 -0500
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-1:000000000000 0:fe4001bdf8d4
1 >M12949|TRGV1*01|Homo sapiens|ORF|V-REGION|174..470|297 nt|1| | | | |297+0=297| |rev-compl|
2 tcttccaacttggaagggagaacgaagtcagtcaccaggctgactgggtcatctgctgaa
3 atcacctgtgatcttcctggagcaagtaccttatacatccactggtacctgcaccaggag
4 gggaaggccccacagtgtcttctgtactatgaaccctactactccagggttgtgctggaa
5 tcaggaatcactccaggaaagtatgacactggaagcacaaggagcaattggaatttgaga
6 ctgcaaaatctaattaaaaatgattctgggttctattactgtgccacctgggacagg
7 >X07206|TRGV10*01|Homo sapiens|ORF|V-REGION|164..474|311 nt|1| | | | |311+0=311| |rev-compl|
8 ttatcaaaagtggagcagttccagctatccatttccacggaagtcaagaaaagtattgac
9 ataccttgcaagatatcgagcacaaggtttgaaacagatgtcattcactggtaccggcag
10 aaaccaaatcaggctttggagcacctgatctatattgtctcaacaaaatccgcagctcga
11 cgcagcatgggtaagacaagcaacaaagtggaggcaagaaagaattctcaaactctcact
12 tcaatccttaccatcaagtccgtagagaaagaagacatggccgtttactactgtgctgcg
13 tggtgggtggc
14 >X74798|TRGV10*02|Homo sapiens|ORF|V-REGION|164..471|308 nt|1| | | | |308+0=308| |rev-compl|
15 ttatcaaaagtggagcagttccagctatccatttccacggaagtcaagaaaagtattgac
16 ataccttgcaagatatcgagcacaaggtttgaaacagatgtcattcactggtaccggcag
17 aaaccaaatcaggctttggagcacctgatctatattgtctcaacaaaatccgcagctcga
18 cgcagcatgggtaagacaagcaacaaagtggaggcaagaaagaattctcaaactctcact
19 tcaatccttaccatcaagtccgtagagaaagaagacatggccgtttactactgtgctgcg
20 tgggatta
21 >Y11227|TRGV11*01|Homo sapiens|ORF|V-REGION|155..463|309 nt|1| | | | |309+0=309| |rev-compl|
22 cttgggcagttggaacaacctgaaatatctatttccagaccagcaaataagagtgcccac
23 atatcttggaaggcatccatccaaggctttagcagtaaaatcatacactggtactggcag
24 aaaccaaacaaaggcttagaatatttattacatgtcttcttgacaatctctgctcaagat
25 tgctcaggtgggaagactaagaaacttgaggtaagtaaaaatgctcacacttccacttcc
26 actttgaaaataaagttcttagagaaagaagatgaggtggtgtaccactgtgcctgctgg
27 attaggcac
28 >AF159056|TRGV11*02|Homo sapiens|ORF|V-REGION|81990..82298|309 nt|1| | | | |309+0=309| |rev-compl|
29 cttgggcagttggaacaacctgaaatatctatttccagaccagcaaataagagtgcccac
30 atatcttggaaggcatccatccaaggctttagcagtaaaatcatacactggtactggcag
31 aaaccaaacaaaggcttagaatatttattacatgtcttcttgacaatctctgctcaagat
32 tgctcaggtgggaagactaagaaacttgagataagtaaaaatgctcacacttccacttcc
33 actttgaaaataaagttcttagagaaagaagatgaggtggtgtaccactgtgcctgctgg
34 attaggcac
35 >M13429|TRGV2*01|Homo sapiens|F|V-REGION|166..465|300 nt|1| | | | |300+0=300| |rev-compl|
36 tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa
37 atcacttgtgatcttgctgaaggaagtaacggctacatccactggtacctacaccaggag
38 gggaaggccccacagcgtcttcagtactatgactcctacaactccaaggttgtgttggaa
39 tcaggagtcagtccagggaagtattatacttacgcaagcacaaggaacaacttgagattg
40 atactgcgaaatctaattgaaaatgactctggggtctattactgtgccacctgggacggg
41 >M27337|TRGV2*02|Homo sapiens|(F)|V-REGION|44..340|297 nt|1| | | | |297+0=297| |rev-compl|
42 tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa
43 atcacttgtgatcttgctgaaggaagtaacggctacatccactggtacctacaccaggag
44 gggaaggccccacagcgtcttcagtactatgactcctacaactccaaggttgtgttggaa
45 tcaggagtcagtccagggaagtattatacttacgcaagcacaaggaacaacttgagattg
46 atactgcaaaatctaattgaaaatgactctggggtctattactgtgccacctgggac
47 >M13430|TRGV3*01|Homo sapiens|F|V-REGION|169..468|300 nt|1| | | | |300+0=300| |rev-compl|
48 tcttccaacttggaagggagaacgaagtcagtcaccaggcagactgggtcatctgctgaa
49 atcacttgcgatcttactgtaacaaataccttctacatccactggtacctacaccaggag
50 gggaaggccccacagcgtcttctgtactatgacgtctccaccgcaagggatgtgttggaa
51 tcaggactcagtccaggaaagtattatactcatacacccaggaggtggagctggatattg
52 agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctgggacagg
53 >X04038|TRGV3*02|Homo sapiens|F|V-REGION|339..637|299 nt|1| | | | |299+0=299| |rev-compl|
54 tcttccaacttggaagggagaacgaagtcagtcaccaggcagactgggtcatctgctgaa
55 atcacttgcgatcttactgtaacaaataccttctacatccactggtacctacaccaggag
56 gggaaggccccacagcgtcttctgtactatgacgtctccactgcaagggatgtgttggaa
57 tcaggactcagtccaggaaagtattatactcatacacccaggaggtggagctggatattg
58 agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctgggacag
59 >X15272|TRGV4*01|Homo sapiens|F|V-REGION|406..705|300 nt|1| | | | |300+0=300| |rev-compl|
60 tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa
61 atcacttgtgatcttgctgaaggaagtaccggctacatccactggtacctacaccaggag
62 gggaaggccccacagcgtcttctgtactatgactcctacacctccagcgttgtgttggaa
63 tcaggaatcagcccagggaagtatgatacttatggaagcacaaggaagaacttgagaatg
64 atactgcgaaatcttattgaaaatgactctggagtctattactgtgccacctgggatggg
65 >X13354|TRGV4*02|Homo sapiens|F|V-REGION|170..469|300 nt|1| | | | |300+0=300| |rev-compl|
66 tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa
67 atcacttgtgatcttgctgaaggaagtaccggctacatccactggtacctacaccaggag
68 gggaaggccccacagcgtcttctgtactatgactcctacacctccagcgttgtgttggaa
69 tcaggaatcagcccagggaagtatgatacttacggaagcacaaggaagaacttgagaatg
70 atactgcgaaatcttattgaaaatgactctggagtctattactgtgccacctgggatggg
71 >X13355|TRGV5*01|Homo sapiens|F|V-REGION|171..470|300 nt|1| | | | |300+0=300| |rev-compl|
72 tcttccaacttggaagggggaacgaagtcagtcacgaggccgactaggtcatctgctgaa
73 atcacttgtgaccttactgtaataaatgccttctacatccactggtacctacaccaggag
74 gggaaggccccacagcgtcttctgtactatgacgtctccaactcaaaggatgtgttggaa
75 tcaggactcagtccaggaaagtattatactcatacacccaggaggtggagctggatattg
76 atactacgaaatctaattgaaaatgattctggggtctattactgtgccacctgggacagg
77 >M13431|TRGV5P*01|Homo sapiens|P|V-REGION|171..470|300 nt|1| | | | |300+0=300| |rev-compl|
78 tcttccaacttggaagggagaatgaagtcagtcaccaggccgactgggtcatctgctgaa
79 atcacttgtgaccttactgtaataaatgccgtctacatccactggtacctacagcaggag
80 gggaagaccccacagcatcttctgcactatgaagtctccaactcaagggatgtgttggaa
81 tcaggtctcagtcttggaaagtattatactcatacaccgaggaggtggagctggaatttg
82 agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctggggcagg
83 >AF159056|TRGV5P*02|Homo sapiens|P|V-REGION|28623..28922|300 nt|1| | | | |300+0=300| |rev-compl|
84 tcttccaacttggaagggagaatgaagtcagtcaccaggccgactgggtcatctgctgaa
85 atcacttgtgaccttactgtaataaatgccgtctacatccactggtacctacagcaggag
86 gggaagaccccacagcatcttctgcactatgatgtctccaactcaagggatgtgttggaa
87 tcaggtctcagtcttggaaagtattatactcatacaccgaggaggtggagctggaatttg
88 agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctggggcagg
89 >M13434|TRGV8*01|Homo sapiens|F|V-REGION|180..479|300 nt|1| | | | |300+0=300| |rev-compl|
90 tcttccaacttggaagggagaacaaagtcagtcaccaggccaactgggtcatcagctgta
91 atcacttgtgatcttcctgtagaaaatgccgtctacacccactggtacctacaccaggag
92 gggaaggccccacagcgtcttctgtactatgactcctacaactccagggttgtgttggaa
93 tcaggaatcagtcgagaaaagtatcatacttatgcaagcacagggaagagccttaaattt
94 atactggaaaatctaattgaacgtgactctggggtctattactgtgccacctgggatagg
95 >X07205|TRGV9*01|Homo sapiens|F|V-REGION|178..483|306 nt|1| | | | |306+0=306| |rev-compl|
96 gcaggtcacctagagcaacctcaaatttccagtactaaaacgctgtcaaaaacagcccgc
97 ctggaatgtgtggtgtctggaataacaatttctgcaacatctgtatattggtatcgagag
98 agacctggtgaagtcatacagttcctggtgtccatttcatatgacggcactgtcagaaag
99 gaatccggcattccgtcaggcaaatttgaggtggataggatacctgaaacgtctacatcc
100 actctcaccattcacaatgtagagaaacaggacatagctacctactactgtgccttgtgg
101 gaggtg
102 >X15274|TRGV9*02|Homo sapiens|F|V-REGION|827..1132|306 nt|1| | | | |306+0=306| |rev-compl|
103 gcaggtcacctagagcaacctcaaatttccagtactaaaacgctgtcaaaaacagcccgc
104 ctggaatgtgtggtgtctggaataaaaatttctgcaacatctgtatattggtatcgagag
105 agacctggtgaagtcatacagttcctggtgtccatttcatatgacggcactgtcagaaag
106 gaatctggcattccgtcaggcaaatttgaggtggataggatacctgaaacgtctacatcc
107 actctcaccattcacaatgtagagaaacaggacatagctacctactactgtgccttgtgg
108 gaggtg
109 >X07208|TRGVA*01|Homo sapiens|P|V-REGION|134..418|285 nt|1| | | | |285+0=285| |rev-compl|
110 ctcatcaggccggagcagctggcccatgtcctggggcactagggaagcttggtcatcctg
111 cagtgcgtggtccgcaccaggatcagctacacccactggtaccagcagaagggccaggtc
112 cctgaggcactccaccagctggccatgtccaagttggatgtgcagtgggattccatcctg
113 aaagcagataaaatcatagccaaggatggcagcagctctatcttggcagtactgaagttg
114 gagacaggcatcgagggcatgaactactgcacaacctgggccctg