diff germline/TRGV.fa @ 0:fe4001bdf8d4 draft

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author davidvanzessen
date Tue, 09 Dec 2014 03:55:01 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/germline/TRGV.fa	Tue Dec 09 03:55:01 2014 -0500
@@ -0,0 +1,114 @@
+>M12949|TRGV1*01|Homo sapiens|ORF|V-REGION|174..470|297 nt|1| | | | |297+0=297| |rev-compl|
+tcttccaacttggaagggagaacgaagtcagtcaccaggctgactgggtcatctgctgaa
+atcacctgtgatcttcctggagcaagtaccttatacatccactggtacctgcaccaggag
+gggaaggccccacagtgtcttctgtactatgaaccctactactccagggttgtgctggaa
+tcaggaatcactccaggaaagtatgacactggaagcacaaggagcaattggaatttgaga
+ctgcaaaatctaattaaaaatgattctgggttctattactgtgccacctgggacagg
+>X07206|TRGV10*01|Homo sapiens|ORF|V-REGION|164..474|311 nt|1| | | | |311+0=311| |rev-compl|
+ttatcaaaagtggagcagttccagctatccatttccacggaagtcaagaaaagtattgac
+ataccttgcaagatatcgagcacaaggtttgaaacagatgtcattcactggtaccggcag
+aaaccaaatcaggctttggagcacctgatctatattgtctcaacaaaatccgcagctcga
+cgcagcatgggtaagacaagcaacaaagtggaggcaagaaagaattctcaaactctcact
+tcaatccttaccatcaagtccgtagagaaagaagacatggccgtttactactgtgctgcg
+tggtgggtggc
+>X74798|TRGV10*02|Homo sapiens|ORF|V-REGION|164..471|308 nt|1| | | | |308+0=308| |rev-compl|
+ttatcaaaagtggagcagttccagctatccatttccacggaagtcaagaaaagtattgac
+ataccttgcaagatatcgagcacaaggtttgaaacagatgtcattcactggtaccggcag
+aaaccaaatcaggctttggagcacctgatctatattgtctcaacaaaatccgcagctcga
+cgcagcatgggtaagacaagcaacaaagtggaggcaagaaagaattctcaaactctcact
+tcaatccttaccatcaagtccgtagagaaagaagacatggccgtttactactgtgctgcg
+tgggatta
+>Y11227|TRGV11*01|Homo sapiens|ORF|V-REGION|155..463|309 nt|1| | | | |309+0=309| |rev-compl|
+cttgggcagttggaacaacctgaaatatctatttccagaccagcaaataagagtgcccac
+atatcttggaaggcatccatccaaggctttagcagtaaaatcatacactggtactggcag
+aaaccaaacaaaggcttagaatatttattacatgtcttcttgacaatctctgctcaagat
+tgctcaggtgggaagactaagaaacttgaggtaagtaaaaatgctcacacttccacttcc
+actttgaaaataaagttcttagagaaagaagatgaggtggtgtaccactgtgcctgctgg
+attaggcac
+>AF159056|TRGV11*02|Homo sapiens|ORF|V-REGION|81990..82298|309 nt|1| | | | |309+0=309| |rev-compl|
+cttgggcagttggaacaacctgaaatatctatttccagaccagcaaataagagtgcccac
+atatcttggaaggcatccatccaaggctttagcagtaaaatcatacactggtactggcag
+aaaccaaacaaaggcttagaatatttattacatgtcttcttgacaatctctgctcaagat
+tgctcaggtgggaagactaagaaacttgagataagtaaaaatgctcacacttccacttcc
+actttgaaaataaagttcttagagaaagaagatgaggtggtgtaccactgtgcctgctgg
+attaggcac
+>M13429|TRGV2*01|Homo sapiens|F|V-REGION|166..465|300 nt|1| | | | |300+0=300| |rev-compl|
+tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa
+atcacttgtgatcttgctgaaggaagtaacggctacatccactggtacctacaccaggag
+gggaaggccccacagcgtcttcagtactatgactcctacaactccaaggttgtgttggaa
+tcaggagtcagtccagggaagtattatacttacgcaagcacaaggaacaacttgagattg
+atactgcgaaatctaattgaaaatgactctggggtctattactgtgccacctgggacggg
+>M27337|TRGV2*02|Homo sapiens|(F)|V-REGION|44..340|297 nt|1| | | | |297+0=297| |rev-compl|
+tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa
+atcacttgtgatcttgctgaaggaagtaacggctacatccactggtacctacaccaggag
+gggaaggccccacagcgtcttcagtactatgactcctacaactccaaggttgtgttggaa
+tcaggagtcagtccagggaagtattatacttacgcaagcacaaggaacaacttgagattg
+atactgcaaaatctaattgaaaatgactctggggtctattactgtgccacctgggac
+>M13430|TRGV3*01|Homo sapiens|F|V-REGION|169..468|300 nt|1| | | | |300+0=300| |rev-compl|
+tcttccaacttggaagggagaacgaagtcagtcaccaggcagactgggtcatctgctgaa
+atcacttgcgatcttactgtaacaaataccttctacatccactggtacctacaccaggag
+gggaaggccccacagcgtcttctgtactatgacgtctccaccgcaagggatgtgttggaa
+tcaggactcagtccaggaaagtattatactcatacacccaggaggtggagctggatattg
+agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctgggacagg
+>X04038|TRGV3*02|Homo sapiens|F|V-REGION|339..637|299 nt|1| | | | |299+0=299| |rev-compl|
+tcttccaacttggaagggagaacgaagtcagtcaccaggcagactgggtcatctgctgaa
+atcacttgcgatcttactgtaacaaataccttctacatccactggtacctacaccaggag
+gggaaggccccacagcgtcttctgtactatgacgtctccactgcaagggatgtgttggaa
+tcaggactcagtccaggaaagtattatactcatacacccaggaggtggagctggatattg
+agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctgggacag
+>X15272|TRGV4*01|Homo sapiens|F|V-REGION|406..705|300 nt|1| | | | |300+0=300| |rev-compl|
+tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa
+atcacttgtgatcttgctgaaggaagtaccggctacatccactggtacctacaccaggag
+gggaaggccccacagcgtcttctgtactatgactcctacacctccagcgttgtgttggaa
+tcaggaatcagcccagggaagtatgatacttatggaagcacaaggaagaacttgagaatg
+atactgcgaaatcttattgaaaatgactctggagtctattactgtgccacctgggatggg
+>X13354|TRGV4*02|Homo sapiens|F|V-REGION|170..469|300 nt|1| | | | |300+0=300| |rev-compl|
+tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa
+atcacttgtgatcttgctgaaggaagtaccggctacatccactggtacctacaccaggag
+gggaaggccccacagcgtcttctgtactatgactcctacacctccagcgttgtgttggaa
+tcaggaatcagcccagggaagtatgatacttacggaagcacaaggaagaacttgagaatg
+atactgcgaaatcttattgaaaatgactctggagtctattactgtgccacctgggatggg
+>X13355|TRGV5*01|Homo sapiens|F|V-REGION|171..470|300 nt|1| | | | |300+0=300| |rev-compl|
+tcttccaacttggaagggggaacgaagtcagtcacgaggccgactaggtcatctgctgaa
+atcacttgtgaccttactgtaataaatgccttctacatccactggtacctacaccaggag
+gggaaggccccacagcgtcttctgtactatgacgtctccaactcaaaggatgtgttggaa
+tcaggactcagtccaggaaagtattatactcatacacccaggaggtggagctggatattg
+atactacgaaatctaattgaaaatgattctggggtctattactgtgccacctgggacagg
+>M13431|TRGV5P*01|Homo sapiens|P|V-REGION|171..470|300 nt|1| | | | |300+0=300| |rev-compl|
+tcttccaacttggaagggagaatgaagtcagtcaccaggccgactgggtcatctgctgaa
+atcacttgtgaccttactgtaataaatgccgtctacatccactggtacctacagcaggag
+gggaagaccccacagcatcttctgcactatgaagtctccaactcaagggatgtgttggaa
+tcaggtctcagtcttggaaagtattatactcatacaccgaggaggtggagctggaatttg
+agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctggggcagg
+>AF159056|TRGV5P*02|Homo sapiens|P|V-REGION|28623..28922|300 nt|1| | | | |300+0=300| |rev-compl|
+tcttccaacttggaagggagaatgaagtcagtcaccaggccgactgggtcatctgctgaa
+atcacttgtgaccttactgtaataaatgccgtctacatccactggtacctacagcaggag
+gggaagaccccacagcatcttctgcactatgatgtctccaactcaagggatgtgttggaa
+tcaggtctcagtcttggaaagtattatactcatacaccgaggaggtggagctggaatttg
+agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctggggcagg
+>M13434|TRGV8*01|Homo sapiens|F|V-REGION|180..479|300 nt|1| | | | |300+0=300| |rev-compl|
+tcttccaacttggaagggagaacaaagtcagtcaccaggccaactgggtcatcagctgta
+atcacttgtgatcttcctgtagaaaatgccgtctacacccactggtacctacaccaggag
+gggaaggccccacagcgtcttctgtactatgactcctacaactccagggttgtgttggaa
+tcaggaatcagtcgagaaaagtatcatacttatgcaagcacagggaagagccttaaattt
+atactggaaaatctaattgaacgtgactctggggtctattactgtgccacctgggatagg
+>X07205|TRGV9*01|Homo sapiens|F|V-REGION|178..483|306 nt|1| | | | |306+0=306| |rev-compl|
+gcaggtcacctagagcaacctcaaatttccagtactaaaacgctgtcaaaaacagcccgc
+ctggaatgtgtggtgtctggaataacaatttctgcaacatctgtatattggtatcgagag
+agacctggtgaagtcatacagttcctggtgtccatttcatatgacggcactgtcagaaag
+gaatccggcattccgtcaggcaaatttgaggtggataggatacctgaaacgtctacatcc
+actctcaccattcacaatgtagagaaacaggacatagctacctactactgtgccttgtgg
+gaggtg
+>X15274|TRGV9*02|Homo sapiens|F|V-REGION|827..1132|306 nt|1| | | | |306+0=306| |rev-compl|
+gcaggtcacctagagcaacctcaaatttccagtactaaaacgctgtcaaaaacagcccgc
+ctggaatgtgtggtgtctggaataaaaatttctgcaacatctgtatattggtatcgagag
+agacctggtgaagtcatacagttcctggtgtccatttcatatgacggcactgtcagaaag
+gaatctggcattccgtcaggcaaatttgaggtggataggatacctgaaacgtctacatcc
+actctcaccattcacaatgtagagaaacaggacatagctacctactactgtgccttgtgg
+gaggtg
+>X07208|TRGVA*01|Homo sapiens|P|V-REGION|134..418|285 nt|1| | | | |285+0=285| |rev-compl|
+ctcatcaggccggagcagctggcccatgtcctggggcactagggaagcttggtcatcctg
+cagtgcgtggtccgcaccaggatcagctacacccactggtaccagcagaagggccaggtc
+cctgaggcactccaccagctggccatgtccaagttggatgtgcagtgggattccatcctg
+aaagcagataaaatcatagccaaggatggcagcagctctatcttggcagtactgaagttg
+gagacaggcatcgagggcatgaactactgcacaacctgggccctg