Mercurial > repos > davidvanzessen > vidjil_with_browser
diff germline/TRGV.fa @ 0:fe4001bdf8d4 draft
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author | davidvanzessen |
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date | Tue, 09 Dec 2014 03:55:01 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/germline/TRGV.fa Tue Dec 09 03:55:01 2014 -0500 @@ -0,0 +1,114 @@ +>M12949|TRGV1*01|Homo sapiens|ORF|V-REGION|174..470|297 nt|1| | | | |297+0=297| |rev-compl| +tcttccaacttggaagggagaacgaagtcagtcaccaggctgactgggtcatctgctgaa +atcacctgtgatcttcctggagcaagtaccttatacatccactggtacctgcaccaggag +gggaaggccccacagtgtcttctgtactatgaaccctactactccagggttgtgctggaa +tcaggaatcactccaggaaagtatgacactggaagcacaaggagcaattggaatttgaga +ctgcaaaatctaattaaaaatgattctgggttctattactgtgccacctgggacagg +>X07206|TRGV10*01|Homo sapiens|ORF|V-REGION|164..474|311 nt|1| | | | |311+0=311| |rev-compl| +ttatcaaaagtggagcagttccagctatccatttccacggaagtcaagaaaagtattgac +ataccttgcaagatatcgagcacaaggtttgaaacagatgtcattcactggtaccggcag +aaaccaaatcaggctttggagcacctgatctatattgtctcaacaaaatccgcagctcga +cgcagcatgggtaagacaagcaacaaagtggaggcaagaaagaattctcaaactctcact +tcaatccttaccatcaagtccgtagagaaagaagacatggccgtttactactgtgctgcg +tggtgggtggc +>X74798|TRGV10*02|Homo sapiens|ORF|V-REGION|164..471|308 nt|1| | | | |308+0=308| |rev-compl| +ttatcaaaagtggagcagttccagctatccatttccacggaagtcaagaaaagtattgac +ataccttgcaagatatcgagcacaaggtttgaaacagatgtcattcactggtaccggcag +aaaccaaatcaggctttggagcacctgatctatattgtctcaacaaaatccgcagctcga +cgcagcatgggtaagacaagcaacaaagtggaggcaagaaagaattctcaaactctcact +tcaatccttaccatcaagtccgtagagaaagaagacatggccgtttactactgtgctgcg +tgggatta +>Y11227|TRGV11*01|Homo sapiens|ORF|V-REGION|155..463|309 nt|1| | | | |309+0=309| |rev-compl| +cttgggcagttggaacaacctgaaatatctatttccagaccagcaaataagagtgcccac +atatcttggaaggcatccatccaaggctttagcagtaaaatcatacactggtactggcag +aaaccaaacaaaggcttagaatatttattacatgtcttcttgacaatctctgctcaagat +tgctcaggtgggaagactaagaaacttgaggtaagtaaaaatgctcacacttccacttcc +actttgaaaataaagttcttagagaaagaagatgaggtggtgtaccactgtgcctgctgg +attaggcac +>AF159056|TRGV11*02|Homo sapiens|ORF|V-REGION|81990..82298|309 nt|1| | | | |309+0=309| |rev-compl| +cttgggcagttggaacaacctgaaatatctatttccagaccagcaaataagagtgcccac +atatcttggaaggcatccatccaaggctttagcagtaaaatcatacactggtactggcag +aaaccaaacaaaggcttagaatatttattacatgtcttcttgacaatctctgctcaagat +tgctcaggtgggaagactaagaaacttgagataagtaaaaatgctcacacttccacttcc +actttgaaaataaagttcttagagaaagaagatgaggtggtgtaccactgtgcctgctgg +attaggcac +>M13429|TRGV2*01|Homo sapiens|F|V-REGION|166..465|300 nt|1| | | | |300+0=300| |rev-compl| +tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa +atcacttgtgatcttgctgaaggaagtaacggctacatccactggtacctacaccaggag +gggaaggccccacagcgtcttcagtactatgactcctacaactccaaggttgtgttggaa +tcaggagtcagtccagggaagtattatacttacgcaagcacaaggaacaacttgagattg +atactgcgaaatctaattgaaaatgactctggggtctattactgtgccacctgggacggg +>M27337|TRGV2*02|Homo sapiens|(F)|V-REGION|44..340|297 nt|1| | | | |297+0=297| |rev-compl| +tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa +atcacttgtgatcttgctgaaggaagtaacggctacatccactggtacctacaccaggag +gggaaggccccacagcgtcttcagtactatgactcctacaactccaaggttgtgttggaa +tcaggagtcagtccagggaagtattatacttacgcaagcacaaggaacaacttgagattg +atactgcaaaatctaattgaaaatgactctggggtctattactgtgccacctgggac +>M13430|TRGV3*01|Homo sapiens|F|V-REGION|169..468|300 nt|1| | | | |300+0=300| |rev-compl| +tcttccaacttggaagggagaacgaagtcagtcaccaggcagactgggtcatctgctgaa +atcacttgcgatcttactgtaacaaataccttctacatccactggtacctacaccaggag +gggaaggccccacagcgtcttctgtactatgacgtctccaccgcaagggatgtgttggaa +tcaggactcagtccaggaaagtattatactcatacacccaggaggtggagctggatattg +agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctgggacagg +>X04038|TRGV3*02|Homo sapiens|F|V-REGION|339..637|299 nt|1| | | | |299+0=299| |rev-compl| +tcttccaacttggaagggagaacgaagtcagtcaccaggcagactgggtcatctgctgaa +atcacttgcgatcttactgtaacaaataccttctacatccactggtacctacaccaggag +gggaaggccccacagcgtcttctgtactatgacgtctccactgcaagggatgtgttggaa +tcaggactcagtccaggaaagtattatactcatacacccaggaggtggagctggatattg +agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctgggacag +>X15272|TRGV4*01|Homo sapiens|F|V-REGION|406..705|300 nt|1| | | | |300+0=300| |rev-compl| +tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa +atcacttgtgatcttgctgaaggaagtaccggctacatccactggtacctacaccaggag +gggaaggccccacagcgtcttctgtactatgactcctacacctccagcgttgtgttggaa +tcaggaatcagcccagggaagtatgatacttatggaagcacaaggaagaacttgagaatg +atactgcgaaatcttattgaaaatgactctggagtctattactgtgccacctgggatggg +>X13354|TRGV4*02|Homo sapiens|F|V-REGION|170..469|300 nt|1| | | | |300+0=300| |rev-compl| +tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa +atcacttgtgatcttgctgaaggaagtaccggctacatccactggtacctacaccaggag +gggaaggccccacagcgtcttctgtactatgactcctacacctccagcgttgtgttggaa +tcaggaatcagcccagggaagtatgatacttacggaagcacaaggaagaacttgagaatg +atactgcgaaatcttattgaaaatgactctggagtctattactgtgccacctgggatggg +>X13355|TRGV5*01|Homo sapiens|F|V-REGION|171..470|300 nt|1| | | | |300+0=300| |rev-compl| +tcttccaacttggaagggggaacgaagtcagtcacgaggccgactaggtcatctgctgaa +atcacttgtgaccttactgtaataaatgccttctacatccactggtacctacaccaggag +gggaaggccccacagcgtcttctgtactatgacgtctccaactcaaaggatgtgttggaa +tcaggactcagtccaggaaagtattatactcatacacccaggaggtggagctggatattg +atactacgaaatctaattgaaaatgattctggggtctattactgtgccacctgggacagg +>M13431|TRGV5P*01|Homo sapiens|P|V-REGION|171..470|300 nt|1| | | | |300+0=300| |rev-compl| +tcttccaacttggaagggagaatgaagtcagtcaccaggccgactgggtcatctgctgaa +atcacttgtgaccttactgtaataaatgccgtctacatccactggtacctacagcaggag +gggaagaccccacagcatcttctgcactatgaagtctccaactcaagggatgtgttggaa +tcaggtctcagtcttggaaagtattatactcatacaccgaggaggtggagctggaatttg +agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctggggcagg +>AF159056|TRGV5P*02|Homo sapiens|P|V-REGION|28623..28922|300 nt|1| | | | |300+0=300| |rev-compl| +tcttccaacttggaagggagaatgaagtcagtcaccaggccgactgggtcatctgctgaa +atcacttgtgaccttactgtaataaatgccgtctacatccactggtacctacagcaggag +gggaagaccccacagcatcttctgcactatgatgtctccaactcaagggatgtgttggaa +tcaggtctcagtcttggaaagtattatactcatacaccgaggaggtggagctggaatttg +agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctggggcagg +>M13434|TRGV8*01|Homo sapiens|F|V-REGION|180..479|300 nt|1| | | | |300+0=300| |rev-compl| +tcttccaacttggaagggagaacaaagtcagtcaccaggccaactgggtcatcagctgta +atcacttgtgatcttcctgtagaaaatgccgtctacacccactggtacctacaccaggag +gggaaggccccacagcgtcttctgtactatgactcctacaactccagggttgtgttggaa +tcaggaatcagtcgagaaaagtatcatacttatgcaagcacagggaagagccttaaattt +atactggaaaatctaattgaacgtgactctggggtctattactgtgccacctgggatagg +>X07205|TRGV9*01|Homo sapiens|F|V-REGION|178..483|306 nt|1| | | | |306+0=306| |rev-compl| +gcaggtcacctagagcaacctcaaatttccagtactaaaacgctgtcaaaaacagcccgc +ctggaatgtgtggtgtctggaataacaatttctgcaacatctgtatattggtatcgagag +agacctggtgaagtcatacagttcctggtgtccatttcatatgacggcactgtcagaaag +gaatccggcattccgtcaggcaaatttgaggtggataggatacctgaaacgtctacatcc +actctcaccattcacaatgtagagaaacaggacatagctacctactactgtgccttgtgg +gaggtg +>X15274|TRGV9*02|Homo sapiens|F|V-REGION|827..1132|306 nt|1| | | | |306+0=306| |rev-compl| +gcaggtcacctagagcaacctcaaatttccagtactaaaacgctgtcaaaaacagcccgc +ctggaatgtgtggtgtctggaataaaaatttctgcaacatctgtatattggtatcgagag +agacctggtgaagtcatacagttcctggtgtccatttcatatgacggcactgtcagaaag +gaatctggcattccgtcaggcaaatttgaggtggataggatacctgaaacgtctacatcc +actctcaccattcacaatgtagagaaacaggacatagctacctactactgtgccttgtgg +gaggtg +>X07208|TRGVA*01|Homo sapiens|P|V-REGION|134..418|285 nt|1| | | | |285+0=285| |rev-compl| +ctcatcaggccggagcagctggcccatgtcctggggcactagggaagcttggtcatcctg +cagtgcgtggtccgcaccaggatcagctacacccactggtaccagcagaagggccaggtc +cctgaggcactccaccagctggccatgtccaagttggatgtgcagtgggattccatcctg +aaagcagataaaatcatagccaaggatggcagcagctctatcttggcagtactgaagttg +gagacaggcatcgagggcatgaactactgcacaacctgggccctg