annotate germline/TRGV.fa @ 0:fe4001bdf8d4 draft

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author davidvanzessen
date Tue, 09 Dec 2014 03:55:01 -0500
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fe4001bdf8d4 Uploaded
davidvanzessen
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1 >M12949|TRGV1*01|Homo sapiens|ORF|V-REGION|174..470|297 nt|1| | | | |297+0=297| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
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2 tcttccaacttggaagggagaacgaagtcagtcaccaggctgactgggtcatctgctgaa
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davidvanzessen
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3 atcacctgtgatcttcctggagcaagtaccttatacatccactggtacctgcaccaggag
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davidvanzessen
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4 gggaaggccccacagtgtcttctgtactatgaaccctactactccagggttgtgctggaa
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davidvanzessen
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5 tcaggaatcactccaggaaagtatgacactggaagcacaaggagcaattggaatttgaga
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davidvanzessen
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6 ctgcaaaatctaattaaaaatgattctgggttctattactgtgccacctgggacagg
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davidvanzessen
parents:
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7 >X07206|TRGV10*01|Homo sapiens|ORF|V-REGION|164..474|311 nt|1| | | | |311+0=311| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
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8 ttatcaaaagtggagcagttccagctatccatttccacggaagtcaagaaaagtattgac
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9 ataccttgcaagatatcgagcacaaggtttgaaacagatgtcattcactggtaccggcag
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10 aaaccaaatcaggctttggagcacctgatctatattgtctcaacaaaatccgcagctcga
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11 cgcagcatgggtaagacaagcaacaaagtggaggcaagaaagaattctcaaactctcact
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12 tcaatccttaccatcaagtccgtagagaaagaagacatggccgtttactactgtgctgcg
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13 tggtgggtggc
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14 >X74798|TRGV10*02|Homo sapiens|ORF|V-REGION|164..471|308 nt|1| | | | |308+0=308| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
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15 ttatcaaaagtggagcagttccagctatccatttccacggaagtcaagaaaagtattgac
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16 ataccttgcaagatatcgagcacaaggtttgaaacagatgtcattcactggtaccggcag
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17 aaaccaaatcaggctttggagcacctgatctatattgtctcaacaaaatccgcagctcga
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davidvanzessen
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18 cgcagcatgggtaagacaagcaacaaagtggaggcaagaaagaattctcaaactctcact
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19 tcaatccttaccatcaagtccgtagagaaagaagacatggccgtttactactgtgctgcg
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20 tgggatta
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davidvanzessen
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21 >Y11227|TRGV11*01|Homo sapiens|ORF|V-REGION|155..463|309 nt|1| | | | |309+0=309| |rev-compl|
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davidvanzessen
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22 cttgggcagttggaacaacctgaaatatctatttccagaccagcaaataagagtgcccac
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davidvanzessen
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23 atatcttggaaggcatccatccaaggctttagcagtaaaatcatacactggtactggcag
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24 aaaccaaacaaaggcttagaatatttattacatgtcttcttgacaatctctgctcaagat
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25 tgctcaggtgggaagactaagaaacttgaggtaagtaaaaatgctcacacttccacttcc
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26 actttgaaaataaagttcttagagaaagaagatgaggtggtgtaccactgtgcctgctgg
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27 attaggcac
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28 >AF159056|TRGV11*02|Homo sapiens|ORF|V-REGION|81990..82298|309 nt|1| | | | |309+0=309| |rev-compl|
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davidvanzessen
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29 cttgggcagttggaacaacctgaaatatctatttccagaccagcaaataagagtgcccac
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davidvanzessen
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30 atatcttggaaggcatccatccaaggctttagcagtaaaatcatacactggtactggcag
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davidvanzessen
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31 aaaccaaacaaaggcttagaatatttattacatgtcttcttgacaatctctgctcaagat
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32 tgctcaggtgggaagactaagaaacttgagataagtaaaaatgctcacacttccacttcc
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33 actttgaaaataaagttcttagagaaagaagatgaggtggtgtaccactgtgcctgctgg
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34 attaggcac
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35 >M13429|TRGV2*01|Homo sapiens|F|V-REGION|166..465|300 nt|1| | | | |300+0=300| |rev-compl|
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davidvanzessen
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36 tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa
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37 atcacttgtgatcttgctgaaggaagtaacggctacatccactggtacctacaccaggag
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38 gggaaggccccacagcgtcttcagtactatgactcctacaactccaaggttgtgttggaa
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39 tcaggagtcagtccagggaagtattatacttacgcaagcacaaggaacaacttgagattg
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40 atactgcgaaatctaattgaaaatgactctggggtctattactgtgccacctgggacggg
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davidvanzessen
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41 >M27337|TRGV2*02|Homo sapiens|(F)|V-REGION|44..340|297 nt|1| | | | |297+0=297| |rev-compl|
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davidvanzessen
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42 tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa
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davidvanzessen
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43 atcacttgtgatcttgctgaaggaagtaacggctacatccactggtacctacaccaggag
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davidvanzessen
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44 gggaaggccccacagcgtcttcagtactatgactcctacaactccaaggttgtgttggaa
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davidvanzessen
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45 tcaggagtcagtccagggaagtattatacttacgcaagcacaaggaacaacttgagattg
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davidvanzessen
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46 atactgcaaaatctaattgaaaatgactctggggtctattactgtgccacctgggac
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davidvanzessen
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47 >M13430|TRGV3*01|Homo sapiens|F|V-REGION|169..468|300 nt|1| | | | |300+0=300| |rev-compl|
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davidvanzessen
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48 tcttccaacttggaagggagaacgaagtcagtcaccaggcagactgggtcatctgctgaa
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davidvanzessen
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49 atcacttgcgatcttactgtaacaaataccttctacatccactggtacctacaccaggag
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davidvanzessen
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50 gggaaggccccacagcgtcttctgtactatgacgtctccaccgcaagggatgtgttggaa
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davidvanzessen
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51 tcaggactcagtccaggaaagtattatactcatacacccaggaggtggagctggatattg
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52 agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctgggacagg
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davidvanzessen
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53 >X04038|TRGV3*02|Homo sapiens|F|V-REGION|339..637|299 nt|1| | | | |299+0=299| |rev-compl|
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davidvanzessen
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54 tcttccaacttggaagggagaacgaagtcagtcaccaggcagactgggtcatctgctgaa
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davidvanzessen
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55 atcacttgcgatcttactgtaacaaataccttctacatccactggtacctacaccaggag
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davidvanzessen
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56 gggaaggccccacagcgtcttctgtactatgacgtctccactgcaagggatgtgttggaa
fe4001bdf8d4 Uploaded
davidvanzessen
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57 tcaggactcagtccaggaaagtattatactcatacacccaggaggtggagctggatattg
fe4001bdf8d4 Uploaded
davidvanzessen
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58 agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctgggacag
fe4001bdf8d4 Uploaded
davidvanzessen
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59 >X15272|TRGV4*01|Homo sapiens|F|V-REGION|406..705|300 nt|1| | | | |300+0=300| |rev-compl|
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davidvanzessen
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60 tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa
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davidvanzessen
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61 atcacttgtgatcttgctgaaggaagtaccggctacatccactggtacctacaccaggag
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davidvanzessen
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62 gggaaggccccacagcgtcttctgtactatgactcctacacctccagcgttgtgttggaa
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davidvanzessen
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63 tcaggaatcagcccagggaagtatgatacttatggaagcacaaggaagaacttgagaatg
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davidvanzessen
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64 atactgcgaaatcttattgaaaatgactctggagtctattactgtgccacctgggatggg
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davidvanzessen
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65 >X13354|TRGV4*02|Homo sapiens|F|V-REGION|170..469|300 nt|1| | | | |300+0=300| |rev-compl|
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davidvanzessen
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66 tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa
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davidvanzessen
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67 atcacttgtgatcttgctgaaggaagtaccggctacatccactggtacctacaccaggag
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davidvanzessen
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68 gggaaggccccacagcgtcttctgtactatgactcctacacctccagcgttgtgttggaa
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davidvanzessen
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69 tcaggaatcagcccagggaagtatgatacttacggaagcacaaggaagaacttgagaatg
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davidvanzessen
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70 atactgcgaaatcttattgaaaatgactctggagtctattactgtgccacctgggatggg
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davidvanzessen
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71 >X13355|TRGV5*01|Homo sapiens|F|V-REGION|171..470|300 nt|1| | | | |300+0=300| |rev-compl|
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davidvanzessen
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72 tcttccaacttggaagggggaacgaagtcagtcacgaggccgactaggtcatctgctgaa
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davidvanzessen
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73 atcacttgtgaccttactgtaataaatgccttctacatccactggtacctacaccaggag
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davidvanzessen
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74 gggaaggccccacagcgtcttctgtactatgacgtctccaactcaaaggatgtgttggaa
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davidvanzessen
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75 tcaggactcagtccaggaaagtattatactcatacacccaggaggtggagctggatattg
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davidvanzessen
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76 atactacgaaatctaattgaaaatgattctggggtctattactgtgccacctgggacagg
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davidvanzessen
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77 >M13431|TRGV5P*01|Homo sapiens|P|V-REGION|171..470|300 nt|1| | | | |300+0=300| |rev-compl|
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davidvanzessen
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78 tcttccaacttggaagggagaatgaagtcagtcaccaggccgactgggtcatctgctgaa
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davidvanzessen
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79 atcacttgtgaccttactgtaataaatgccgtctacatccactggtacctacagcaggag
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davidvanzessen
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80 gggaagaccccacagcatcttctgcactatgaagtctccaactcaagggatgtgttggaa
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davidvanzessen
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81 tcaggtctcagtcttggaaagtattatactcatacaccgaggaggtggagctggaatttg
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davidvanzessen
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82 agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctggggcagg
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davidvanzessen
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83 >AF159056|TRGV5P*02|Homo sapiens|P|V-REGION|28623..28922|300 nt|1| | | | |300+0=300| |rev-compl|
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davidvanzessen
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84 tcttccaacttggaagggagaatgaagtcagtcaccaggccgactgggtcatctgctgaa
fe4001bdf8d4 Uploaded
davidvanzessen
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85 atcacttgtgaccttactgtaataaatgccgtctacatccactggtacctacagcaggag
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davidvanzessen
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86 gggaagaccccacagcatcttctgcactatgatgtctccaactcaagggatgtgttggaa
fe4001bdf8d4 Uploaded
davidvanzessen
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87 tcaggtctcagtcttggaaagtattatactcatacaccgaggaggtggagctggaatttg
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davidvanzessen
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88 agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctggggcagg
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davidvanzessen
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89 >M13434|TRGV8*01|Homo sapiens|F|V-REGION|180..479|300 nt|1| | | | |300+0=300| |rev-compl|
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davidvanzessen
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90 tcttccaacttggaagggagaacaaagtcagtcaccaggccaactgggtcatcagctgta
fe4001bdf8d4 Uploaded
davidvanzessen
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91 atcacttgtgatcttcctgtagaaaatgccgtctacacccactggtacctacaccaggag
fe4001bdf8d4 Uploaded
davidvanzessen
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92 gggaaggccccacagcgtcttctgtactatgactcctacaactccagggttgtgttggaa
fe4001bdf8d4 Uploaded
davidvanzessen
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93 tcaggaatcagtcgagaaaagtatcatacttatgcaagcacagggaagagccttaaattt
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davidvanzessen
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94 atactggaaaatctaattgaacgtgactctggggtctattactgtgccacctgggatagg
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davidvanzessen
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95 >X07205|TRGV9*01|Homo sapiens|F|V-REGION|178..483|306 nt|1| | | | |306+0=306| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
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96 gcaggtcacctagagcaacctcaaatttccagtactaaaacgctgtcaaaaacagcccgc
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davidvanzessen
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97 ctggaatgtgtggtgtctggaataacaatttctgcaacatctgtatattggtatcgagag
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98 agacctggtgaagtcatacagttcctggtgtccatttcatatgacggcactgtcagaaag
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davidvanzessen
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99 gaatccggcattccgtcaggcaaatttgaggtggataggatacctgaaacgtctacatcc
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100 actctcaccattcacaatgtagagaaacaggacatagctacctactactgtgccttgtgg
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101 gaggtg
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102 >X15274|TRGV9*02|Homo sapiens|F|V-REGION|827..1132|306 nt|1| | | | |306+0=306| |rev-compl|
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davidvanzessen
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103 gcaggtcacctagagcaacctcaaatttccagtactaaaacgctgtcaaaaacagcccgc
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davidvanzessen
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104 ctggaatgtgtggtgtctggaataaaaatttctgcaacatctgtatattggtatcgagag
fe4001bdf8d4 Uploaded
davidvanzessen
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105 agacctggtgaagtcatacagttcctggtgtccatttcatatgacggcactgtcagaaag
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davidvanzessen
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106 gaatctggcattccgtcaggcaaatttgaggtggataggatacctgaaacgtctacatcc
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107 actctcaccattcacaatgtagagaaacaggacatagctacctactactgtgccttgtgg
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108 gaggtg
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109 >X07208|TRGVA*01|Homo sapiens|P|V-REGION|134..418|285 nt|1| | | | |285+0=285| |rev-compl|
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davidvanzessen
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110 ctcatcaggccggagcagctggcccatgtcctggggcactagggaagcttggtcatcctg
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davidvanzessen
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111 cagtgcgtggtccgcaccaggatcagctacacccactggtaccagcagaagggccaggtc
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davidvanzessen
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112 cctgaggcactccaccagctggccatgtccaagttggatgtgcagtgggattccatcctg
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davidvanzessen
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113 aaagcagataaaatcatagccaaggatggcagcagctctatcttggcagtactgaagttg
fe4001bdf8d4 Uploaded
davidvanzessen
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114 gagacaggcatcgagggcatgaactactgcacaacctgggccctg