Mercurial > repos > davidvanzessen > igparse

changeset 1:d55fb6a8df5a draft

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Uploaded
author davidvanzessen
date Thu, 26 Sep 2013 11:02:18 -0400
parents 07cd591055fb
children c86b568de930
files igparse.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/igparse.xml	Mon Sep 23 08:59:50 2013 -0400
+++ b/igparse.xml	Thu Sep 26 11:02:18 2013 -0400
@@ -1,7 +1,7 @@
 <tool id="igparse" name="igBLASTreport parser" version="0.2.0">
 	<description>Parse igBLASTn report (output format -m 3)</description>
 	<command>
-		perl /usr/local/galaxy/galaxy-dist/tools/igblast/igparse/igparse.pl $input $record | grep -v "D:" | cut -f2- > $output
+		perl igparse.pl $input $record | grep -v "D:" | cut -f2- > $output
 	</command>
 	<inputs>
 		<param name="input" type="data" format="text" label="igBLASTn report"/>