Mercurial > repos > davidvanzessen > igblast_human

comparison tool_dependencies.xml @ 24:5ae33d75f4bd draft

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author davidvanzessen
date Tue, 24 Sep 2013 08:58:56 -0400
parents 84addbc152e0
children b1a2bef435a1
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23:84addbc152e0 24:5ae33d75f4bd
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="download_by_url" target_filename="ncbi-igblast-1.0.0-x64-linux.tar.gz"> 9 <action type="download_by_url" target_filename="ncbi-igblast-1.0.0-x64-linux.tar.gz">
10 ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz 10 ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz
11 </action> 11 </action>
12
13
14 <action type="move_directory_files">
15 <source_directory>
16 ncbi-igblast-1.0.0
17 </source_directory>
18 <destination_director>
19 $INSTALL_DIR/nzbi-igblast-1.0.0
20 </destination_director>
21 </action>
22 <action type="set_environment">
23 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR</environment_variable>
24 </action>
25
26 <action type="make_directory">
27 $INSTALL_DIR/ncbi-igblast-1.0.0/internal_data
28 </action>
29 <action type="make_directory">
30 $INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human
31 </action>
12 32
13 33
34 <action type="download_by_url">
35 ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V*
36 </action>
37 <action type="move_file">
38 <source>
39 human_V*
40 </source>
41 <destination>
42 $INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human
43 </destination>
44 </action>
45
46
14 </actions> 47 </actions>
15 </install> 48 </install>
16 <readme> 49 <readme>
17 Downloads igBlast with the human_V internal data file. 50 Downloads igBlast with the human_V internal data file.
18 </readme> 51 </readme>