Mercurial > repos > bgruening > text_processing
annotate head.xml @ 26:f22a309187a3 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit c2b1677d1c94433f777c2dc28ac8eec0a99cc6a7
| author | bgruening |
|---|---|
| date | Fri, 16 Aug 2024 10:41:17 +0000 |
| parents | 7725ab6dab67 |
| children |
| rev | line source |
|---|---|
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26
f22a309187a3
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit c2b1677d1c94433f777c2dc28ac8eec0a99cc6a7
bgruening
parents:
14
diff
changeset
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1 <tool id="tp_head_tool" name="Select first" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> |
| 0 | 2 <description>lines from a dataset (head)</description> |
| 4 | 3 <macros> |
| 4 <import>macros.xml</import> | |
| 5 </macros> | |
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26
f22a309187a3
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit c2b1677d1c94433f777c2dc28ac8eec0a99cc6a7
bgruening
parents:
14
diff
changeset
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6 <expand macro="creator"/> |
| 4 | 7 <expand macro="requirements" /> |
| 8 <version_command>head --version | head -n 1</version_command> | |
| 0 | 9 <command> |
| 4 | 10 <![CDATA[ |
| 11 head | |
| 12 --lines | |
| 13 $complement$count | |
| 14 '${infile}' | |
| 15 > '${outfile}' | |
| 16 ]]> | |
| 0 | 17 </command> |
| 18 <inputs> | |
| 4 | 19 <param name="infile" type="data" format="txt" label="File to select" /> |
| 0 | 20 <param name="complement" type="select" label="Operation"> |
| 21 <option value="">Keep first lines</option> | |
| 22 <option value="-">Remove last lines</option> | |
| 23 </param> | |
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c78b1767db2b
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
bgruening
parents:
7
diff
changeset
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24 <param name="count" type="integer" value="10" |
| 6 | 25 label="Number of lines" help="These will be kept/discarded depending on 'operation'. (--lines)" /> |
| 0 | 26 </inputs> |
| 27 <outputs> | |
| 6 | 28 <data name="outfile" format_source="infile" metadata_source="infile"/> |
| 0 | 29 </outputs> |
| 1 | 30 <tests> |
| 31 <test> | |
| 32 <param name="count" value="10"/> | |
| 33 <param name="infile" value="1.bed"/> | |
| 4 | 34 <output name="outfile" file="head_results1.bed"/> |
| 1 | 35 </test> |
| 36 </tests> | |
| 0 | 37 <help> |
| 4 | 38 <![CDATA[ |
| 0 | 39 **What it does** |
| 40 | |
| 1 | 41 This tool outputs specified number of lines from the **beginning** of a dataset |
| 42 | |
| 43 ----- | |
| 44 | |
| 45 **Example** | |
| 46 | |
| 47 Selecting 2 lines from this:: | |
| 48 | |
| 49 chr7 56632 56652 D17003_CTCF_R6 310 + | |
| 50 chr7 56736 56756 D17003_CTCF_R7 354 + | |
| 51 chr7 56761 56781 D17003_CTCF_R4 220 + | |
| 52 chr7 56772 56792 D17003_CTCF_R7 372 + | |
| 53 chr7 56775 56795 D17003_CTCF_R4 207 + | |
| 54 | |
| 55 will produce:: | |
| 56 | |
| 57 chr7 56632 56652 D17003_CTCF_R6 310 + | |
| 58 chr7 56736 56756 D17003_CTCF_R7 354 + | |
| 59 | |
| 4 | 60 ]]> |
| 0 | 61 </help> |
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7725ab6dab67
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b'e6ee273f75fff61d1e419283fa8088528cf59470\n'
bgruening
parents:
10
diff
changeset
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62 <expand macro="citations" /> |
| 0 | 63 </tool> |