Mercurial > repos > bgruening > text_processing
annotate head.xml @ 10:c78b1767db2b draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
| author | bgruening |
|---|---|
| date | Fri, 26 Feb 2016 12:22:54 -0500 |
| parents | d64eace4f9f3 |
| children | 7725ab6dab67 |
| rev | line source |
|---|---|
| 4 | 1 <tool id="tp_head_tool" name="Select first" version="@BASE_VERSION@.0"> |
| 0 | 2 <description>lines from a dataset (head)</description> |
| 4 | 3 <macros> |
| 4 <import>macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements" /> | |
| 7 <version_command>head --version | head -n 1</version_command> | |
| 0 | 8 <command> |
| 4 | 9 <![CDATA[ |
| 10 head | |
| 11 --lines | |
| 12 $complement$count | |
| 13 '${infile}' | |
| 14 > '${outfile}' | |
| 15 ]]> | |
| 0 | 16 </command> |
| 17 <inputs> | |
| 4 | 18 <param name="infile" type="data" format="txt" label="File to select" /> |
| 0 | 19 <param name="complement" type="select" label="Operation"> |
| 20 <option value="">Keep first lines</option> | |
| 21 <option value="-">Remove last lines</option> | |
| 22 </param> | |
|
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c78b1767db2b
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
bgruening
parents:
7
diff
changeset
|
23 <param name="count" type="integer" value="10" |
| 6 | 24 label="Number of lines" help="These will be kept/discarded depending on 'operation'. (--lines)" /> |
| 0 | 25 </inputs> |
| 26 <outputs> | |
| 6 | 27 <data name="outfile" format_source="infile" metadata_source="infile"/> |
| 0 | 28 </outputs> |
| 1 | 29 <tests> |
| 30 <test> | |
| 31 <param name="count" value="10"/> | |
| 32 <param name="infile" value="1.bed"/> | |
| 4 | 33 <output name="outfile" file="head_results1.bed"/> |
| 1 | 34 </test> |
| 35 </tests> | |
| 0 | 36 <help> |
| 4 | 37 <![CDATA[ |
| 0 | 38 **What it does** |
| 39 | |
| 1 | 40 This tool outputs specified number of lines from the **beginning** of a dataset |
| 41 | |
| 42 ----- | |
| 43 | |
| 44 **Example** | |
| 45 | |
| 46 Selecting 2 lines from this:: | |
| 47 | |
| 48 chr7 56632 56652 D17003_CTCF_R6 310 + | |
| 49 chr7 56736 56756 D17003_CTCF_R7 354 + | |
| 50 chr7 56761 56781 D17003_CTCF_R4 220 + | |
| 51 chr7 56772 56792 D17003_CTCF_R7 372 + | |
| 52 chr7 56775 56795 D17003_CTCF_R4 207 + | |
| 53 | |
| 54 will produce:: | |
| 55 | |
| 56 chr7 56632 56652 D17003_CTCF_R6 310 + | |
| 57 chr7 56736 56756 D17003_CTCF_R7 354 + | |
| 58 | |
| 4 | 59 @REFERENCES@ |
| 60 ]]> | |
| 0 | 61 </help> |
| 62 </tool> |