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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <tool id="SeedListGenerator" name="SeedListGenerator" version="1.12.0">
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3 <description>Generates seed lists for feature detection.</description>
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4 <macros>
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5 <token name="@EXECUTABLE@">SeedListGenerator</token>
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6 <import>macros.xml</import>
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7 </macros>
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8 <expand macro="stdio"/>
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9 <expand macro="requirements"/>
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10 <command>SeedListGenerator
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11
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12 -in ${param_in}
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13 -out ${param_out}
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14 ${param_use_peptide_mass}
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15 -threads \${GALAXY_SLOTS:-24}
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16 </command>
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17 <inputs>
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18 <param name="param_in" type="data" format="mzML,idXML,featureXML,consensusXML" optional="False" label="Input file (see below for details)" help="(-in)"/>
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19 <param name="param_use_peptide_mass" type="boolean" truevalue="-use_peptide_mass true" falsevalue="-use_peptide_mass false" checked="false" optional="True" label="[idXML input only] Use the monoisotopic mass of the best peptide hit for the m/z position (default: use precursor m/z)" help="(-use_peptide_mass)"/>
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20 </inputs>
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21 <outputs>
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22 <data name="param_out" label="Output file(s)" format="featureXML"/>
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23 </outputs>
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24 <help>**What it does**
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25
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26 Generates seed lists for feature detection.
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27
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28
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29 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SeedListGenerator.html
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30
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31 @REFERENCES@
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32 </help>
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33 </tool>
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