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comparison SeedListGenerator.xml @ 0:3d84209d3178 draft

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author bgruening
date Fri, 10 Oct 2014 18:20:03 -0400
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1 <?xml version='1.0' encoding='UTF-8'?>
2 <tool id="SeedListGenerator" name="SeedListGenerator" version="1.12.0">
3 <description>Generates seed lists for feature detection.</description>
4 <macros>
5 <token name="@EXECUTABLE@">SeedListGenerator</token>
6 <import>macros.xml</import>
7 </macros>
8 <expand macro="stdio"/>
9 <expand macro="requirements"/>
10 <command>SeedListGenerator
11
12 -in ${param_in}
13 -out ${param_out}
14 ${param_use_peptide_mass}
15 -threads \${GALAXY_SLOTS:-24}
16 </command>
17 <inputs>
18 <param name="param_in" type="data" format="mzML,idXML,featureXML,consensusXML" optional="False" label="Input file (see below for details)" help="(-in)"/>
19 <param name="param_use_peptide_mass" type="boolean" truevalue="-use_peptide_mass true" falsevalue="-use_peptide_mass false" checked="false" optional="True" label="[idXML input only] Use the monoisotopic mass of the best peptide hit for the m/z position (default: use precursor m/z)" help="(-use_peptide_mass)"/>
20 </inputs>
21 <outputs>
22 <data name="param_out" label="Output file(s)" format="featureXML"/>
23 </outputs>
24 <help>**What it does**
25
26 Generates seed lists for feature detection.
27
28
29 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SeedListGenerator.html
30
31 @REFERENCES@
32 </help>
33 </tool>