diff SeedListGenerator.xml @ 0:3d84209d3178 draft

Uploaded
author bgruening
date Fri, 10 Oct 2014 18:20:03 -0400
parents
children 6ead64a594bd
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SeedListGenerator.xml	Fri Oct 10 18:20:03 2014 -0400
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+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="SeedListGenerator" name="SeedListGenerator" version="1.12.0">
+  <description>Generates seed lists for feature detection.</description>
+  <macros>
+    <token name="@EXECUTABLE@">SeedListGenerator</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>SeedListGenerator
+
+-in ${param_in}
+-out ${param_out}
+${param_use_peptide_mass}
+-threads \${GALAXY_SLOTS:-24} 
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="mzML,idXML,featureXML,consensusXML" optional="False" label="Input file (see below for details)" help="(-in)"/>
+    <param name="param_use_peptide_mass" type="boolean" truevalue="-use_peptide_mass true" falsevalue="-use_peptide_mass false" checked="false" optional="True" label="[idXML input only] Use the monoisotopic mass of the best peptide hit for the m/z position (default: use precursor m/z)" help="(-use_peptide_mass)"/>
+  </inputs>
+  <outputs>
+    <data name="param_out" label="Output file(s)" format="featureXML"/>
+  </outputs>
+  <help>**What it does**
+
+Generates seed lists for feature detection.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SeedListGenerator.html
+
+@REFERENCES@
+</help>
+</tool>