Mercurial > repos > bgruening > openms
diff SeedListGenerator.xml @ 0:3d84209d3178 draft
Uploaded
| author | bgruening |
|---|---|
| date | Fri, 10 Oct 2014 18:20:03 -0400 |
| parents | |
| children | 6ead64a594bd |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/SeedListGenerator.xml Fri Oct 10 18:20:03 2014 -0400 @@ -0,0 +1,33 @@ +<?xml version='1.0' encoding='UTF-8'?> +<tool id="SeedListGenerator" name="SeedListGenerator" version="1.12.0"> + <description>Generates seed lists for feature detection.</description> + <macros> + <token name="@EXECUTABLE@">SeedListGenerator</token> + <import>macros.xml</import> + </macros> + <expand macro="stdio"/> + <expand macro="requirements"/> + <command>SeedListGenerator + +-in ${param_in} +-out ${param_out} +${param_use_peptide_mass} +-threads \${GALAXY_SLOTS:-24} +</command> + <inputs> + <param name="param_in" type="data" format="mzML,idXML,featureXML,consensusXML" optional="False" label="Input file (see below for details)" help="(-in)"/> + <param name="param_use_peptide_mass" type="boolean" truevalue="-use_peptide_mass true" falsevalue="-use_peptide_mass false" checked="false" optional="True" label="[idXML input only] Use the monoisotopic mass of the best peptide hit for the m/z position (default: use precursor m/z)" help="(-use_peptide_mass)"/> + </inputs> + <outputs> + <data name="param_out" label="Output file(s)" format="featureXML"/> + </outputs> + <help>**What it does** + +Generates seed lists for feature detection. + + +For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SeedListGenerator.html + +@REFERENCES@ +</help> +</tool>
