<tool id="count_seqs" name="Count sequences" version="1.9.1">

	<description></description>

    <macros>
        <import>macros.xml</import>
    </macros>

    <expand macro="requirements" />

    <version_command><![CDATA[
        count_seqs.py --version
    ]]>
    </version_command>

    <command><![CDATA[
        count_seqs.py

            -i $input_files
            -o $output_fp

            $suppress_errors
 ]]>
    </command>

	<inputs>
        <param name="input_files" type="data" format="fasta" 
            label="Input sequence file" help="(-i/--input_fps)" 
            multiple="True"/>

        <param name="suppress_errors" type="boolean" label="Suppress warnings 
            about missing files?" truevalue="--suppress_errors" falsevalue="" 
            checked="False" help="(--suppress_errors)" />
    </inputs>

	<outputs>
        <data name="output_fp" format="txt"/>
    </outputs>

    <tests>
        <test>
            <param name="input_files" 
                value="split_fastq_libraries_sequences.fasta" />
            <output name="output_fp" value="" />
        </test>
    </tests>

    <help><![CDATA[
**What it does**

This tool counts the sequences in fasta files

More information about this tool is available on 
`QIIME documentation <http://qiime.org/scripts/count_seqs.html>`_.
]]>
    </help>

    <citations>
        <expand macro="citations" />
    </citations>
</tool>