Mercurial > repos > bebatut > qiime

diff count_seqs.xml @ 0:c1bd0c560018 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime commit bcbe76277f3e60303faf826f8ce7f018bc663a9a-dirty
author bebatut
date Tue, 02 Feb 2016 05:50:37 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/count_seqs.xml	Tue Feb 02 05:50:37 2016 -0500
@@ -0,0 +1,61 @@
+<tool id="count_seqs" name="Count sequences" version="1.9.1">
+
+	<description></description>
+
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+
+    <expand macro="requirements" />
+
+    <version_command><![CDATA[
+        count_seqs.py --version
+    ]]>
+    </version_command>
+
+    <command><![CDATA[
+        count_seqs.py
+
+            -i $input_files
+            -o $output_fp
+
+            $suppress_errors
+ ]]>
+    </command>
+
+	<inputs>
+        <param name="input_files" type="data" format="fasta" 
+            label="Input sequence file" help="(-i/--input_fps)" 
+            multiple="True"/>
+
+        <param name="suppress_errors" type="boolean" label="Suppress warnings 
+            about missing files?" truevalue="--suppress_errors" falsevalue="" 
+            checked="False" help="(--suppress_errors)" />
+    </inputs>
+
+	<outputs>
+        <data name="output_fp" format="txt"/>
+    </outputs>
+
+    <tests>
+        <test>
+            <param name="input_files" 
+                value="split_fastq_libraries_sequences.fasta" />
+            <output name="output_fp" value="" />
+        </test>
+    </tests>
+
+    <help><![CDATA[
+**What it does**
+
+This tool counts the sequences in fasta files
+
+More information about this tool is available on 
+`QIIME documentation <http://qiime.org/scripts/count_seqs.html>`_.
+]]>
+    </help>
+
+    <citations>
+        <expand macro="citations" />
+    </citations>
+</tool>