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comparison count_seqs.xml @ 0:c1bd0c560018 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime commit bcbe76277f3e60303faf826f8ce7f018bc663a9a-dirty
author bebatut
date Tue, 02 Feb 2016 05:50:37 -0500
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-1:000000000000 0:c1bd0c560018
1 <tool id="count_seqs" name="Count sequences" version="1.9.1">
2
3 <description></description>
4
5 <macros>
6 <import>macros.xml</import>
7 </macros>
8
9 <expand macro="requirements" />
10
11 <version_command><![CDATA[
12 count_seqs.py --version
13 ]]>
14 </version_command>
15
16 <command><![CDATA[
17 count_seqs.py
18
19 -i $input_files
20 -o $output_fp
21
22 $suppress_errors
23 ]]>
24 </command>
25
26 <inputs>
27 <param name="input_files" type="data" format="fasta"
28 label="Input sequence file" help="(-i/--input_fps)"
29 multiple="True"/>
30
31 <param name="suppress_errors" type="boolean" label="Suppress warnings
32 about missing files?" truevalue="--suppress_errors" falsevalue=""
33 checked="False" help="(--suppress_errors)" />
34 </inputs>
35
36 <outputs>
37 <data name="output_fp" format="txt"/>
38 </outputs>
39
40 <tests>
41 <test>
42 <param name="input_files"
43 value="split_fastq_libraries_sequences.fasta" />
44 <output name="output_fp" value="" />
45 </test>
46 </tests>
47
48 <help><![CDATA[
49 **What it does**
50
51 This tool counts the sequences in fasta files
52
53 More information about this tool is available on
54 `QIIME documentation <http://qiime.org/scripts/count_seqs.html>`_.
55 ]]>
56 </help>
57
58 <citations>
59 <expand macro="citations" />
60 </citations>
61 </tool>