Mercurial > repos > bebatut > humann2

annotate humann2_split_table.xml @ 9:7d2be77d5b83 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
author bebatut
date Thu, 31 Mar 2016 03:35:17 -0400
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children e504cd2410a6
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1 <tool id="humann2_split_table" name="Split HUMAnN2 table" version="0.5.0">
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2 <description></description>
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4 <macros>
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5 <import>humann2_macros.xml</import>
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6 </macros>
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8 <expand macro="requirements"/>
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9 <expand macro="stdio"/>
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11 <version_command>
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12 <![CDATA[
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13 humann2_split_table --version
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14 ]]>
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15 </version_command>
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17 <command><![CDATA[
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18 humann2_split_table
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19 -i "input_file"
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20 -o "output"
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21 ]]></command>
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23 <inputs>
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24 <param name="input_file" type="data" format="tsv,biom"
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25 label="Gene/pathway table to read" help=""/>
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26 </inputs>
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28 <outputs>
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29 <outputs>
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30 <data format="txt" name="report">
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31 <discover_datasets pattern="__designation__" ext="tabular" directory="output" visible="true" />
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32 </data>
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33 </outputs>
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34 </outputs>
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36 <tests>
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37 <test>
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38 <param name="input_file" value="humann2_input.fasta"/>
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39 </test>
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40 </tests>
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42 <help><![CDATA[
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43 **What it does**
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45 Split HUMAnN2 table is a tool to split a gene/pathway table in table per sample.
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47 HUMAnN is a pipeline for efficiently and accuretly profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data. `Read more about the tool <http://huttenhower.sph.harvard.edu/humann2/manual>`_.
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48 ]]></help>
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49
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50 <citations>
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51 </citations>
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52 </tool>