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comparison humann2_split_table.xml @ 9:7d2be77d5b83 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
author bebatut
date Thu, 31 Mar 2016 03:35:17 -0400
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8:0d3d44f13122 9:7d2be77d5b83
1 <tool id="humann2_split_table" name="Split HUMAnN2 table" version="0.5.0">
2 <description></description>
3
4 <macros>
5 <import>humann2_macros.xml</import>
6 </macros>
7
8 <expand macro="requirements"/>
9 <expand macro="stdio"/>
10
11 <version_command>
12 <![CDATA[
13 humann2_split_table --version
14 ]]>
15 </version_command>
16
17 <command><![CDATA[
18 humann2_split_table
19 -i "input_file"
20 -o "output"
21 ]]></command>
22
23 <inputs>
24 <param name="input_file" type="data" format="tsv,biom"
25 label="Gene/pathway table to read" help=""/>
26 </inputs>
27
28 <outputs>
29 <outputs>
30 <data format="txt" name="report">
31 <discover_datasets pattern="__designation__" ext="tabular" directory="output" visible="true" />
32 </data>
33 </outputs>
34 </outputs>
35
36 <tests>
37 <test>
38 <param name="input_file" value="humann2_input.fasta"/>
39 </test>
40 </tests>
41
42 <help><![CDATA[
43 **What it does**
44
45 Split HUMAnN2 table is a tool to split a gene/pathway table in table per sample.
46
47 HUMAnN is a pipeline for efficiently and accuretly profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data. `Read more about the tool <http://huttenhower.sph.harvard.edu/humann2/manual>`_.
48 ]]></help>
49
50 <citations>
51 </citations>
52 </tool>