Mercurial > repos > bebatut > humann2
diff humann2_split_table.xml @ 9:7d2be77d5b83 draft
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
| author | bebatut |
|---|---|
| date | Thu, 31 Mar 2016 03:35:17 -0400 |
| parents | |
| children | e504cd2410a6 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/humann2_split_table.xml Thu Mar 31 03:35:17 2016 -0400 @@ -0,0 +1,52 @@ +<tool id="humann2_split_table" name="Split HUMAnN2 table" version="0.5.0"> + <description></description> + + <macros> + <import>humann2_macros.xml</import> + </macros> + + <expand macro="requirements"/> + <expand macro="stdio"/> + + <version_command> +<![CDATA[ + humann2_split_table --version +]]> + </version_command> + + <command><![CDATA[ + humann2_split_table + -i "input_file" + -o "output" + ]]></command> + + <inputs> + <param name="input_file" type="data" format="tsv,biom" + label="Gene/pathway table to read" help=""/> + </inputs> + + <outputs> + <outputs> + <data format="txt" name="report"> + <discover_datasets pattern="__designation__" ext="tabular" directory="output" visible="true" /> + </data> + </outputs> + </outputs> + + <tests> + <test> + <param name="input_file" value="humann2_input.fasta"/> + </test> + </tests> + + <help><![CDATA[ + **What it does** + + Split HUMAnN2 table is a tool to split a gene/pathway table in table per sample. + + HUMAnN is a pipeline for efficiently and accuretly profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data. `Read more about the tool <http://huttenhower.sph.harvard.edu/humann2/manual>`_. + ]]></help> + + <citations> + </citations> +</tool> \ No newline at end of file
