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1 # -------------------
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2 # define our includes
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3 # -------------------
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4 OBJ_DIR = ../../../obj/
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5 INCLUDES = -Isrc/ -Iinclude/
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6
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7 # ----------------------------------
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8 # define our source and object files
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9 # ----------------------------------
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10
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11 SOURCES= src/api/BamAlignment.cpp \
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12 src/api/BamMultiReader.cpp \
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13 src/api/BamReader.cpp \
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14 src/api/BamWriter.cpp \
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15 src/api/SamHeader.cpp \
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16 src/api/SamProgram.cpp \
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17 src/api/SamProgramChain.cpp \
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18 src/api/SamReadGroup.cpp \
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19 src/api/SamReadGroupDictionary.cpp \
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20 src/api/SamSequence.cpp \
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21 src/api/SamSequenceDictionary.cpp \
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22 src/api/internal/BamHeader_p.cpp \
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23 src/api/internal/BamIndexFactory_p.cpp \
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24 src/api/internal/BamMultiReader_p.cpp \
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25 src/api/internal/BamRandomAccessController_p.cpp \
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26 src/api/internal/BamReader_p.cpp \
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27 src/api/internal/BamStandardIndex_p.cpp \
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28 src/api/internal/BamToolsIndex_p.cpp \
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29 src/api/internal/BamWriter_p.cpp \
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30 src/api/internal/BgzfStream_p.cpp \
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31 src/api/internal/SamFormatParser_p.cpp \
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32 src/api/internal/SamFormatPrinter_p.cpp \
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33 src/api/internal/SamHeaderValidator_p.cpp
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34
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35 # ----------------------------------
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36 # define our source and object files
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37 # ----------------------------------
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38 OBJECTS= $(SOURCES:.cpp=.o)
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39 LIBRARY=libbamtools.a
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40
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41 all: $(LIBRARY)
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42
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43 .PHONY: all
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44
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45 $(LIBRARY): $(OBJECTS)
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46 [ -d lib ] || mkdir -p lib
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47 [ -d include ] || mkdir -p include
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48 [ -d include/api ] || mkdir -p include/api
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49 [ -d include/shared ] || mkdir -p include/shared
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50
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51 @cp src/api/*.h include/api
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52 @cp src/shared/*.h include/shared
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53
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54
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55 @echo " * linking $(LIBRARY)"
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56 ar cr lib/$@ $^
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57
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58 $(OBJECTS): $(SOURCES)
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59 @echo " * compiling" $(*F).cpp
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60 @$(CXX) -c $(*D)/$(*F).cpp $(LDFLAGS) $(CXXFLAGS) $(INCLUDES) -o $(*D)/$(*F).o
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61 |
