--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/BEDTools-Version-2.14.3/src/utils/BamTools/Makefile	Thu Nov 03 10:25:04 2011 -0400
@@ -0,0 +1,61 @@
+# -------------------
+# define our includes
+# -------------------
+OBJ_DIR = ../../../obj/
+INCLUDES = -Isrc/ -Iinclude/
+
+# ----------------------------------
+# define our source and object files
+# ----------------------------------
+
+SOURCES= src/api/BamAlignment.cpp \
+         src/api/BamMultiReader.cpp \
+         src/api/BamReader.cpp \
+         src/api/BamWriter.cpp \
+         src/api/SamHeader.cpp \
+         src/api/SamProgram.cpp \
+         src/api/SamProgramChain.cpp \
+         src/api/SamReadGroup.cpp \
+         src/api/SamReadGroupDictionary.cpp \
+         src/api/SamSequence.cpp \
+         src/api/SamSequenceDictionary.cpp \
+		 src/api/internal/BamHeader_p.cpp \
+		 src/api/internal/BamIndexFactory_p.cpp \
+		 src/api/internal/BamMultiReader_p.cpp \
+		 src/api/internal/BamRandomAccessController_p.cpp \
+		 src/api/internal/BamReader_p.cpp \
+		 src/api/internal/BamStandardIndex_p.cpp \
+		 src/api/internal/BamToolsIndex_p.cpp \
+		 src/api/internal/BamWriter_p.cpp \
+		 src/api/internal/BgzfStream_p.cpp \
+		 src/api/internal/SamFormatParser_p.cpp \
+		 src/api/internal/SamFormatPrinter_p.cpp \
+		 src/api/internal/SamHeaderValidator_p.cpp
+
+# ----------------------------------
+# define our source and object files
+# ----------------------------------
+OBJECTS= $(SOURCES:.cpp=.o)
+LIBRARY=libbamtools.a
+
+all: $(LIBRARY)
+    
+.PHONY: all
+
+$(LIBRARY): $(OBJECTS)
+	[ -d lib ] || mkdir -p lib
+	[ -d include ] || mkdir -p include
+	[ -d include/api ] || mkdir -p include/api
+	[ -d include/shared ] || mkdir -p include/shared
+	
+	@cp src/api/*.h include/api
+	@cp src/shared/*.h include/shared
+	
+		
+	@echo "  * linking $(LIBRARY)"
+	ar cr lib/$@  $^
+		
+$(OBJECTS): $(SOURCES)
+	@echo "  * compiling" $(*F).cpp
+	@$(CXX) -c $(*D)/$(*F).cpp $(LDFLAGS) $(CXXFLAGS) $(INCLUDES) -o $(*D)/$(*F).o
+	
\ No newline at end of file