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comparison BEDTools-Version-2.14.3/src/utils/BamTools/Makefile @ 0:dfcd8b6c1bda

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author aaronquinlan
date Thu, 03 Nov 2011 10:25:04 -0400
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-1:000000000000 0:dfcd8b6c1bda
1 # -------------------
2 # define our includes
3 # -------------------
4 OBJ_DIR = ../../../obj/
5 INCLUDES = -Isrc/ -Iinclude/
6
7 # ----------------------------------
8 # define our source and object files
9 # ----------------------------------
10
11 SOURCES= src/api/BamAlignment.cpp \
12 src/api/BamMultiReader.cpp \
13 src/api/BamReader.cpp \
14 src/api/BamWriter.cpp \
15 src/api/SamHeader.cpp \
16 src/api/SamProgram.cpp \
17 src/api/SamProgramChain.cpp \
18 src/api/SamReadGroup.cpp \
19 src/api/SamReadGroupDictionary.cpp \
20 src/api/SamSequence.cpp \
21 src/api/SamSequenceDictionary.cpp \
22 src/api/internal/BamHeader_p.cpp \
23 src/api/internal/BamIndexFactory_p.cpp \
24 src/api/internal/BamMultiReader_p.cpp \
25 src/api/internal/BamRandomAccessController_p.cpp \
26 src/api/internal/BamReader_p.cpp \
27 src/api/internal/BamStandardIndex_p.cpp \
28 src/api/internal/BamToolsIndex_p.cpp \
29 src/api/internal/BamWriter_p.cpp \
30 src/api/internal/BgzfStream_p.cpp \
31 src/api/internal/SamFormatParser_p.cpp \
32 src/api/internal/SamFormatPrinter_p.cpp \
33 src/api/internal/SamHeaderValidator_p.cpp
34
35 # ----------------------------------
36 # define our source and object files
37 # ----------------------------------
38 OBJECTS= $(SOURCES:.cpp=.o)
39 LIBRARY=libbamtools.a
40
41 all: $(LIBRARY)
42
43 .PHONY: all
44
45 $(LIBRARY): $(OBJECTS)
46 [ -d lib ] || mkdir -p lib
47 [ -d include ] || mkdir -p include
48 [ -d include/api ] || mkdir -p include/api
49 [ -d include/shared ] || mkdir -p include/shared
50
51 @cp src/api/*.h include/api
52 @cp src/shared/*.h include/shared
53
54
55 @echo " * linking $(LIBRARY)"
56 ar cr lib/$@ $^
57
58 $(OBJECTS): $(SOURCES)
59 @echo " * compiling" $(*F).cpp
60 @$(CXX) -c $(*D)/$(*F).cpp $(LDFLAGS) $(CXXFLAGS) $(INCLUDES) -o $(*D)/$(*F).o
61