Mercurial > repos > aaronquinlan > multi_intersect
comparison BEDTools-Version-2.14.3/src/utils/BamTools/Makefile @ 0:dfcd8b6c1bda
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author | aaronquinlan |
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date | Thu, 03 Nov 2011 10:25:04 -0400 |
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-1:000000000000 | 0:dfcd8b6c1bda |
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1 # ------------------- | |
2 # define our includes | |
3 # ------------------- | |
4 OBJ_DIR = ../../../obj/ | |
5 INCLUDES = -Isrc/ -Iinclude/ | |
6 | |
7 # ---------------------------------- | |
8 # define our source and object files | |
9 # ---------------------------------- | |
10 | |
11 SOURCES= src/api/BamAlignment.cpp \ | |
12 src/api/BamMultiReader.cpp \ | |
13 src/api/BamReader.cpp \ | |
14 src/api/BamWriter.cpp \ | |
15 src/api/SamHeader.cpp \ | |
16 src/api/SamProgram.cpp \ | |
17 src/api/SamProgramChain.cpp \ | |
18 src/api/SamReadGroup.cpp \ | |
19 src/api/SamReadGroupDictionary.cpp \ | |
20 src/api/SamSequence.cpp \ | |
21 src/api/SamSequenceDictionary.cpp \ | |
22 src/api/internal/BamHeader_p.cpp \ | |
23 src/api/internal/BamIndexFactory_p.cpp \ | |
24 src/api/internal/BamMultiReader_p.cpp \ | |
25 src/api/internal/BamRandomAccessController_p.cpp \ | |
26 src/api/internal/BamReader_p.cpp \ | |
27 src/api/internal/BamStandardIndex_p.cpp \ | |
28 src/api/internal/BamToolsIndex_p.cpp \ | |
29 src/api/internal/BamWriter_p.cpp \ | |
30 src/api/internal/BgzfStream_p.cpp \ | |
31 src/api/internal/SamFormatParser_p.cpp \ | |
32 src/api/internal/SamFormatPrinter_p.cpp \ | |
33 src/api/internal/SamHeaderValidator_p.cpp | |
34 | |
35 # ---------------------------------- | |
36 # define our source and object files | |
37 # ---------------------------------- | |
38 OBJECTS= $(SOURCES:.cpp=.o) | |
39 LIBRARY=libbamtools.a | |
40 | |
41 all: $(LIBRARY) | |
42 | |
43 .PHONY: all | |
44 | |
45 $(LIBRARY): $(OBJECTS) | |
46 [ -d lib ] || mkdir -p lib | |
47 [ -d include ] || mkdir -p include | |
48 [ -d include/api ] || mkdir -p include/api | |
49 [ -d include/shared ] || mkdir -p include/shared | |
50 | |
51 @cp src/api/*.h include/api | |
52 @cp src/shared/*.h include/shared | |
53 | |
54 | |
55 @echo " * linking $(LIBRARY)" | |
56 ar cr lib/$@ $^ | |
57 | |
58 $(OBJECTS): $(SOURCES) | |
59 @echo " * compiling" $(*F).cpp | |
60 @$(CXX) -c $(*D)/$(*F).cpp $(LDFLAGS) $(CXXFLAGS) $(INCLUDES) -o $(*D)/$(*F).o | |
61 |