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1 /*****************************************************************************
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2 bamAncillary.h
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3
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4 (c) 2009 - Aaron Quinlan
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5 Hall Laboratory
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6 Department of Biochemistry and Molecular Genetics
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7 University of Virginia
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8 aaronquinlan@gmail.com
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9
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10 Licensed under the GNU General Public License 2.0 license.
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11 ******************************************************************************/
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12 #include "bedFile.h"
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13 #include "lineFileUtilities.h"
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14 #include "api/BamAlignment.h"
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15
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16 namespace BamTools {
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17 void getBamBlocks(const BamAlignment &bam, const RefVector &refs,
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18 vector<BED> &blocks, bool includeDeletions = true);
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19 }
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