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comparison BEDTools-Version-2.14.3/src/utils/BamTools-Ancillary/BamAncillary.h @ 0:dfcd8b6c1bda

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author aaronquinlan
date Thu, 03 Nov 2011 10:25:04 -0400
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1 /*****************************************************************************
2 bamAncillary.h
3
4 (c) 2009 - Aaron Quinlan
5 Hall Laboratory
6 Department of Biochemistry and Molecular Genetics
7 University of Virginia
8 aaronquinlan@gmail.com
9
10 Licensed under the GNU General Public License 2.0 license.
11 ******************************************************************************/
12 #include "bedFile.h"
13 #include "lineFileUtilities.h"
14 #include "api/BamAlignment.h"
15
16 namespace BamTools {
17 void getBamBlocks(const BamAlignment &bam, const RefVector &refs,
18 vector<BED> &blocks, bool includeDeletions = true);
19 }