Mercurial > repos > aaronquinlan > multi_intersect
diff BEDTools-Version-2.14.3/src/utils/BamTools-Ancillary/BamAncillary.h @ 0:dfcd8b6c1bda
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author | aaronquinlan |
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date | Thu, 03 Nov 2011 10:25:04 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/BEDTools-Version-2.14.3/src/utils/BamTools-Ancillary/BamAncillary.h Thu Nov 03 10:25:04 2011 -0400 @@ -0,0 +1,19 @@ +/***************************************************************************** + bamAncillary.h + + (c) 2009 - Aaron Quinlan + Hall Laboratory + Department of Biochemistry and Molecular Genetics + University of Virginia + aaronquinlan@gmail.com + + Licensed under the GNU General Public License 2.0 license. +******************************************************************************/ +#include "bedFile.h" +#include "lineFileUtilities.h" +#include "api/BamAlignment.h" + +namespace BamTools { + void getBamBlocks(const BamAlignment &bam, const RefVector &refs, + vector<BED> &blocks, bool includeDeletions = true); +}