diff BEDTools-Version-2.14.3/src/utils/BamTools-Ancillary/BamAncillary.h @ 0:dfcd8b6c1bda

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author aaronquinlan
date Thu, 03 Nov 2011 10:25:04 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/BEDTools-Version-2.14.3/src/utils/BamTools-Ancillary/BamAncillary.h	Thu Nov 03 10:25:04 2011 -0400
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+/*****************************************************************************
+  bamAncillary.h
+
+  (c) 2009 - Aaron Quinlan
+  Hall Laboratory
+  Department of Biochemistry and Molecular Genetics
+  University of Virginia
+  aaronquinlan@gmail.com
+
+  Licensed under the GNU General Public License 2.0 license.
+******************************************************************************/
+#include "bedFile.h"
+#include "lineFileUtilities.h"
+#include "api/BamAlignment.h"
+
+namespace BamTools {
+    void getBamBlocks(const BamAlignment &bam, const RefVector &refs,
+                        vector<BED> &blocks, bool includeDeletions = true);
+}