diff get_DB_data.xml @ 13:5b16f2911491 draft default tip

planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
author tduigou
date Fri, 23 May 2025 13:47:21 +0000
parents ee28ec28140d
children
line wrap: on
line diff
--- a/get_DB_data.xml	Fri May 23 12:45:20 2025 +0000
+++ b/get_DB_data.xml	Fri May 23 13:47:21 2025 +0000
@@ -37,31 +37,71 @@
     <tests>
     <!--python get_db_info.py -input 'test-data/test_input.csv' -sequence_column 'sequence' -annotation_column 'annotation' -db_uri 'postgresql://postgres:RK17@localhost:5432/test_fragments_db' -table 'sample' -fragment_column 'fragment' -output 'test-data/output'-->
         <test> 
-            <param name="input" value="test_input.csv" />
+            <param name="input" value="2-step-golden_gate_plan.csv" />
             <param name="table" value="sample" />
             <param name="sequence_column" value="sequence" />
             <param name="annotation_columns" value="annotation" />
             <param name="fragment_column" value="fragment" />
             <param name="db_uri" value="postgresql://postgres:RK17@localhost:5432/test_fragments_db" />
-            <output_collection name="output_gb" type="list" count="4">
-                <element name="ACP10001AaCbbBS">
+            <output_collection name="output_gb" type="list" count="12">
+                <element name="part_A">
+                    <assert_contents>
+                     <has_n_lines min="10" />
+                    </assert_contents>
+                </element>
+                <element name="part_B">
                     <assert_contents>
-                     <has_n_lines min="3" />
+                     <has_n_lines min="10" />
+                    </assert_contents>
+                </element>
+                <element name="part_C">
+                    <assert_contents>
+                     <has_n_lines min="10" />
+                    </assert_contents>
+                </element>
+                <element name="part_D">
+                    <assert_contents>
+                     <has_n_lines min="10" />
+                    </assert_contents>
+                </element>
+                <element name="part_E">
+                    <assert_contents>
+                     <has_n_lines min="10" />
                     </assert_contents>
                 </element>
-                <element name="CFP10002AaCbbBS">
+                <element name="part_F">
+                    <assert_contents>
+                     <has_n_lines min="10" />
+                    </assert_contents>
+                </element>
+                <element name="part_G">
                     <assert_contents>
-                     <has_n_lines min="3" />
+                     <has_n_lines min="10" />
+                    </assert_contents>
+                </element>
+                <element name="part_H">
+                    <assert_contents>
+                     <has_n_lines min="10" />
                     </assert_contents>
                 </element>
-                <element name="QWE10004AaCbbBS">
+                <element name="part_I">
                     <assert_contents>
-                     <has_n_lines min="3" />
+                     <has_n_lines min="10" />
                     </assert_contents>
                 </element>
-                <element name="XYZ10003AaCbbBS">
+                <element name="part_J">
+                    <assert_contents>
+                     <has_n_lines min="10" />
+                    </assert_contents>
+                </element>
+                <element name="part_K">
                     <assert_contents>
-                     <has_n_lines min="3" />
+                     <has_n_lines min="10" />
+                    </assert_contents>
+                </element>
+                <element name="part_L">
+                    <assert_contents>
+                     <has_n_lines min="10" />
                     </assert_contents>
                 </element>
             </output_collection>