Mercurial > repos > tduigou > get_db_info
diff get_DB_data.xml @ 13:5b16f2911491 draft default tip
planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
| author | tduigou |
|---|---|
| date | Fri, 23 May 2025 13:47:21 +0000 |
| parents | ee28ec28140d |
| children |
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--- a/get_DB_data.xml Fri May 23 12:45:20 2025 +0000 +++ b/get_DB_data.xml Fri May 23 13:47:21 2025 +0000 @@ -37,31 +37,71 @@ <tests> <!--python get_db_info.py -input 'test-data/test_input.csv' -sequence_column 'sequence' -annotation_column 'annotation' -db_uri 'postgresql://postgres:RK17@localhost:5432/test_fragments_db' -table 'sample' -fragment_column 'fragment' -output 'test-data/output'--> <test> - <param name="input" value="test_input.csv" /> + <param name="input" value="2-step-golden_gate_plan.csv" /> <param name="table" value="sample" /> <param name="sequence_column" value="sequence" /> <param name="annotation_columns" value="annotation" /> <param name="fragment_column" value="fragment" /> <param name="db_uri" value="postgresql://postgres:RK17@localhost:5432/test_fragments_db" /> - <output_collection name="output_gb" type="list" count="4"> - <element name="ACP10001AaCbbBS"> + <output_collection name="output_gb" type="list" count="12"> + <element name="part_A"> + <assert_contents> + <has_n_lines min="10" /> + </assert_contents> + </element> + <element name="part_B"> <assert_contents> - <has_n_lines min="3" /> + <has_n_lines min="10" /> + </assert_contents> + </element> + <element name="part_C"> + <assert_contents> + <has_n_lines min="10" /> + </assert_contents> + </element> + <element name="part_D"> + <assert_contents> + <has_n_lines min="10" /> + </assert_contents> + </element> + <element name="part_E"> + <assert_contents> + <has_n_lines min="10" /> </assert_contents> </element> - <element name="CFP10002AaCbbBS"> + <element name="part_F"> + <assert_contents> + <has_n_lines min="10" /> + </assert_contents> + </element> + <element name="part_G"> <assert_contents> - <has_n_lines min="3" /> + <has_n_lines min="10" /> + </assert_contents> + </element> + <element name="part_H"> + <assert_contents> + <has_n_lines min="10" /> </assert_contents> </element> - <element name="QWE10004AaCbbBS"> + <element name="part_I"> <assert_contents> - <has_n_lines min="3" /> + <has_n_lines min="10" /> </assert_contents> </element> - <element name="XYZ10003AaCbbBS"> + <element name="part_J"> + <assert_contents> + <has_n_lines min="10" /> + </assert_contents> + </element> + <element name="part_K"> <assert_contents> - <has_n_lines min="3" /> + <has_n_lines min="10" /> + </assert_contents> + </element> + <element name="part_L"> + <assert_contents> + <has_n_lines min="10" /> </assert_contents> </element> </output_collection>
