Mercurial > repos > tduigou > get_db_info

comparison get_DB_data.xml @ 13:5b16f2911491 draft default tip

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planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
author tduigou
date Fri, 23 May 2025 13:47:21 +0000
parents ee28ec28140d
children
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12:ee28ec28140d 13:5b16f2911491
35 </collection> 35 </collection>
36 </outputs> 36 </outputs>
37 <tests> 37 <tests>
38 <!--python get_db_info.py -input 'test-data/test_input.csv' -sequence_column 'sequence' -annotation_column 'annotation' -db_uri 'postgresql://postgres:RK17@localhost:5432/test_fragments_db' -table 'sample' -fragment_column 'fragment' -output 'test-data/output'--> 38 <!--python get_db_info.py -input 'test-data/test_input.csv' -sequence_column 'sequence' -annotation_column 'annotation' -db_uri 'postgresql://postgres:RK17@localhost:5432/test_fragments_db' -table 'sample' -fragment_column 'fragment' -output 'test-data/output'-->
39 <test> 39 <test>
40 <param name="input" value="test_input.csv" /> 40 <param name="input" value="2-step-golden_gate_plan.csv" />
41 <param name="table" value="sample" /> 41 <param name="table" value="sample" />
42 <param name="sequence_column" value="sequence" /> 42 <param name="sequence_column" value="sequence" />
43 <param name="annotation_columns" value="annotation" /> 43 <param name="annotation_columns" value="annotation" />
44 <param name="fragment_column" value="fragment" /> 44 <param name="fragment_column" value="fragment" />
45 <param name="db_uri" value="postgresql://postgres:RK17@localhost:5432/test_fragments_db" /> 45 <param name="db_uri" value="postgresql://postgres:RK17@localhost:5432/test_fragments_db" />
46 <output_collection name="output_gb" type="list" count="4"> 46 <output_collection name="output_gb" type="list" count="12">
47 <element name="ACP10001AaCbbBS"> 47 <element name="part_A">
48 <assert_contents> 48 <assert_contents>
49 <has_n_lines min="3" /> 49 <has_n_lines min="10" />
50 </assert_contents> 50 </assert_contents>
51 </element> 51 </element>
52 <element name="CFP10002AaCbbBS"> 52 <element name="part_B">
53 <assert_contents> 53 <assert_contents>
54 <has_n_lines min="3" /> 54 <has_n_lines min="10" />
55 </assert_contents> 55 </assert_contents>
56 </element> 56 </element>
57 <element name="QWE10004AaCbbBS"> 57 <element name="part_C">
58 <assert_contents> 58 <assert_contents>
59 <has_n_lines min="3" /> 59 <has_n_lines min="10" />
60 </assert_contents> 60 </assert_contents>
61 </element> 61 </element>
62 <element name="XYZ10003AaCbbBS"> 62 <element name="part_D">
63 <assert_contents> 63 <assert_contents>
64 <has_n_lines min="3" /> 64 <has_n_lines min="10" />
65 </assert_contents>
66 </element>
67 <element name="part_E">
68 <assert_contents>
69 <has_n_lines min="10" />
70 </assert_contents>
71 </element>
72 <element name="part_F">
73 <assert_contents>
74 <has_n_lines min="10" />
75 </assert_contents>
76 </element>
77 <element name="part_G">
78 <assert_contents>
79 <has_n_lines min="10" />
80 </assert_contents>
81 </element>
82 <element name="part_H">
83 <assert_contents>
84 <has_n_lines min="10" />
85 </assert_contents>
86 </element>
87 <element name="part_I">
88 <assert_contents>
89 <has_n_lines min="10" />
90 </assert_contents>
91 </element>
92 <element name="part_J">
93 <assert_contents>
94 <has_n_lines min="10" />
95 </assert_contents>
96 </element>
97 <element name="part_K">
98 <assert_contents>
99 <has_n_lines min="10" />
100 </assert_contents>
101 </element>
102 <element name="part_L">
103 <assert_contents>
104 <has_n_lines min="10" />
65 </assert_contents> 105 </assert_contents>
66 </element> 106 </element>
67 </output_collection> 107 </output_collection>
68 </test> 108 </test>
69 </tests> 109 </tests>