Mercurial > repos > rv43 > tomo
changeset 33:afb612b64f26 draft
"planemo upload for repository https://github.com/rolfverberg/galaxytools commit c566c32f7c1506ab271ae08eb14a2982ee511938"
author | rv43 |
---|---|
date | Tue, 19 Apr 2022 14:59:12 +0000 |
parents | b1f92b63f84c |
children | 63de912323e5 |
files | tomo.py |
diffstat | 1 files changed, 3 insertions(+), 4 deletions(-) [+] |
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--- a/tomo.py Tue Apr 19 14:44:53 2022 +0000 +++ b/tomo.py Tue Apr 19 14:59:12 2022 +0000 @@ -1459,7 +1459,7 @@ """ if num_core is None: num_core = self.num_core - logging.info(f'num_core = {self.num_core}') + logging.info(f'num_core = {num_core}') # Try loading any already preprocessed stacks (skip in Galaxy) # preprocessed stack order for each one in stack: row,theta,column stack_info = self.config['stack_info'] @@ -1543,8 +1543,7 @@ """ if num_core is None: num_core = self.num_core - num_core = 1 - logging.info(f'num_core = {self.num_core}') + logging.info(f'num_core = {num_core}') logging.debug('Find centers for tomography stacks') stacks = self.config['stack_info']['stacks'] available_stacks = [stack['index'] for stack in stacks if stack.get('preprocessed', False)] @@ -1896,7 +1895,7 @@ """ if num_core is None: num_core = self.num_core - logging.info(f'num_core = {self.num_core}') + logging.info(f'num_core = {num_core}') if self.galaxy_flag: assert(galaxy_param) if not os.path.exists('center_slice_pngs'):