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annotate tomo_reconstruct.xml @ 3:f9c52762c32c draft

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"planemo upload for repository https://github.com/rolfverberg/galaxytools commit 7dce44d576e4149f31bdc2ee4dce0bb6962badb6"
author rv43
date Tue, 05 Apr 2022 18:23:54 +0000
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children 845270a96464
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3
f9c52762c32c "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 7dce44d576e4149f31bdc2ee4dce0bb6962badb6"
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1 <tool id="tomo_reconstruct" name="Tomo Reconstruction" version="0.1.0" python_template_version="3.9">
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2 <description>Perform a tomography reconstruction</description>
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3 <requirements>
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4 <requirement type="package" version="1.11.0">tomopy</requirement>
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5 <requirement type="package" version="3.6.0">h5py</requirement>
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6 </requirements>
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7 <command detect_errors="exit_code"><![CDATA[
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8 $__tool_directory__/tomo_reconstruct.py
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9 -i '$red_stacks'
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10 -c '$config'
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11 --output_data 'output.npz'
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12 --output_config 'output_config.yaml'
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13 -l '$log'
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14 ]]></command>
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15 <inputs>
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16 <param name="red_stacks" type='data' format='npz' optional='false' label="Reduced stacks"/>
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17 <param name="config" type='data' format='yaml' optional='false' label="Input config"/>
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18 </inputs>
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19 <outputs>
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20 <data name="output_data" format="npz" label="Reconstructed tomography stacks" from_work_dir="output_data.npz"/>
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21 <data name="output_config" format="yaml" label="Output config" from_work_dir="output_config.yaml"/>
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22 <data name="log" format="txt" label="Log"/>
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23 </outputs>
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24 <help><![CDATA[
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25 Reconstruct tomography images.
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26 ]]></help>
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27 <citations>
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28 <citation type="bibtex">
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29 @misc{githubsum_files,
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30 author = {Verberg, Rolf},
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31 year = {2022},
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32 title = {Tomo Reconstruction},
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33 }</citation>
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34 </citations>
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35
f9c52762c32c "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 7dce44d576e4149f31bdc2ee4dce0bb6962badb6"
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36 </tool>