Mercurial > repos > rv43 > tomo
comparison tomo_reconstruct.xml @ 3:f9c52762c32c draft
"planemo upload for repository https://github.com/rolfverberg/galaxytools commit 7dce44d576e4149f31bdc2ee4dce0bb6962badb6"
| author | rv43 |
|---|---|
| date | Tue, 05 Apr 2022 18:23:54 +0000 |
| parents | |
| children | 845270a96464 |
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| 2:b8977c98800b | 3:f9c52762c32c |
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| 1 <tool id="tomo_reconstruct" name="Tomo Reconstruction" version="0.1.0" python_template_version="3.9"> | |
| 2 <description>Perform a tomography reconstruction</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="1.11.0">tomopy</requirement> | |
| 5 <requirement type="package" version="3.6.0">h5py</requirement> | |
| 6 </requirements> | |
| 7 <command detect_errors="exit_code"><![CDATA[ | |
| 8 $__tool_directory__/tomo_reconstruct.py | |
| 9 -i '$red_stacks' | |
| 10 -c '$config' | |
| 11 --output_data 'output.npz' | |
| 12 --output_config 'output_config.yaml' | |
| 13 -l '$log' | |
| 14 ]]></command> | |
| 15 <inputs> | |
| 16 <param name="red_stacks" type='data' format='npz' optional='false' label="Reduced stacks"/> | |
| 17 <param name="config" type='data' format='yaml' optional='false' label="Input config"/> | |
| 18 </inputs> | |
| 19 <outputs> | |
| 20 <data name="output_data" format="npz" label="Reconstructed tomography stacks" from_work_dir="output_data.npz"/> | |
| 21 <data name="output_config" format="yaml" label="Output config" from_work_dir="output_config.yaml"/> | |
| 22 <data name="log" format="txt" label="Log"/> | |
| 23 </outputs> | |
| 24 <help><![CDATA[ | |
| 25 Reconstruct tomography images. | |
| 26 ]]></help> | |
| 27 <citations> | |
| 28 <citation type="bibtex"> | |
| 29 @misc{githubsum_files, | |
| 30 author = {Verberg, Rolf}, | |
| 31 year = {2022}, | |
| 32 title = {Tomo Reconstruction}, | |
| 33 }</citation> | |
| 34 </citations> | |
| 35 | |
| 36 </tool> |