Mercurial > repos > rv43 > tomo

annotate detector.py @ 65:f31ef7bfb430 draft

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"planemo upload for repository https://github.com/rolfverberg/galaxytools commit d55db09b45d0b542f966cef17892858bb55d94f7"
author rv43
date Thu, 18 Aug 2022 14:57:39 +0000
parents 15288e9746e0
children
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1 import logging
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2 import os
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3 import yaml
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4 from functools import cache
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5 from copy import deepcopy
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7 from general import illegal_value, is_int, is_num, input_yesno
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9 #from hexrd.instrument import HEDMInstrument, PlanarDetector
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11 class DetectorConfig:
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12 def __init__(self, config_source):
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13 self._config_source = config_source
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14
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15 if isinstance(self._config_source, ((str, bytes, os.PathLike, int))):
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16 self._config_file = self._config_source
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17 self._config = self._load_config_file()
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18 elif isinstance(self._config_source, dict):
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19 self._config_file = None
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20 self._config = self._config_source
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21 else:
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22 self._config_file = None
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23 self._config = False
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25 self._valid = self._validate()
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27 if not self.valid:
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28 logging.error(f'Cannot create a valid instance of {self.__class__.__name__} '+
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29 f'from {self._config_source}')
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31 def __repr__(self):
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32 return(f'{self.__class__.__name__}({self._config_source.__repr__()})')
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33 def __str__(self):
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34 return(f'{self.__class__.__name__} generated from {self._config_source}')
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36 @property
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37 def config_file(self):
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38 return(self._config_file)
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40 @property
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41 def config(self):
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42 return(deepcopy(self._config))
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44 @property
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45 def valid(self):
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46 return(self._valid)
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48 def load_config_file(self):
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49 raise(NotImplementedError)
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51 def validate(self):
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52 raise(NotImplementedError)
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54 def _load_config_file(self):
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55 if not os.path.isfile(self.config_file):
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56 logging.error(f'{self.config_file} is not a file.')
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57 return(False)
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58 else:
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59 return(self.load_config_file())
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61 def _validate(self):
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62 if not self.config:
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63 logging.error('A configuration must be loaded prior to calling Detector._validate')
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64 return(False)
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65 else:
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66 return(self.validate())
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67
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68 def _write_to_file(self, out_file):
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69 out_file = os.path.abspath(out_file)
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71 current_config_valid = self.validate()
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72 if not current_config_valid:
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73 write_invalid_config = input_yesno(s=f'This {self.__class__.__name__} is currently '+
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74 f'invalid. Write the configuration to {out_file} anyways?', default='no')
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75 if not write_invalid_config:
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76 logging.info('In accordance with user input, the invalid configuration will '+
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77 f'not be written to {out_file}')
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78 return
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80 if os.access(out_file, os.W_OK):
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81 if os.path.exists(out_file):
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82 overwrite = input_yesno(s=f'{out_file} already exists. Overwrite?', default='no')
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83 if overwrite:
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84 self.write_to_file(out_file)
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85 else:
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86 logging.info(f'In accordance with user input, {out_file} will not be '+
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87 'overwritten')
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88 else:
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89 self.write_to_file(out_file)
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90 else:
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91 logging.error(f'Insufficient permissions to write to {out_file}')
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92
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93 def write_to_file(self, out_file):
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94 raise(NotImplementedError)
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96 class YamlDetectorConfig(DetectorConfig):
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97 def __init__(self, config_source, validate_yaml_pars=[]):
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98 self._validate_yaml_pars = validate_yaml_pars
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99 super().__init__(config_source)
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100
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101 def load_config_file(self):
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102 if not os.path.splitext(self._config_file)[1]:
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103 if os.path.isfile(f'{self._config_file}.yml'):
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104 self._config_file = f'{self._config_file}.yml'
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105 if os.path.isfile(f'{self._config_file}.yaml'):
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106 self._config_file = f'{self._config_file}.yaml'
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107 if not os.path.isfile(self._config_file):
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108 logging.error(f'Unable to load {self._config_file}')
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109 return(False)
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110 with open(self._config_file, 'r') as infile:
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111 config = yaml.safe_load(infile)
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112 if isinstance(config, dict):
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113 return(config)
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114 else:
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115 logging.error(f'Unable to load {self._config_file} as a dictionary')
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116 return(False)
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117
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118 def validate(self):
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119 if not self._validate_yaml_pars:
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120 logging.warning('There are no required parameters provided for this detector '+
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121 'configuration')
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122 return(True)
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123
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124 def validate_nested_pars(config, validate_yaml_par):
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125 yaml_par_levels = validate_yaml_par.split(':')
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126 first_level_par = yaml_par_levels[0]
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127 try:
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128 first_level_par = int(first_level_par)
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129 except:
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130 pass
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131 try:
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132 next_level_config = config[first_level_par]
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133 if len(yaml_par_levels) > 1:
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134 next_level_pars = ':'.join(yaml_par_levels[1:])
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135 return(validate_nested_pars(next_level_config, next_level_pars))
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136 else:
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137 return(True)
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138 except:
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139 return(False)
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140
65
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diff changeset
141 pars_missing = [p for p in self._validate_yaml_pars
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diff changeset
142 if not validate_nested_pars(self.config, p)]
49
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143 if len(pars_missing) > 0:
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144 logging.error(f'Missing item(s) in configuration: {", ".join(pars_missing)}')
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145 return(False)
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146 else:
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147 return(True)
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148
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149 def write_to_file(self, out_file):
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150 with open(out_file, 'w') as outf:
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151 yaml.dump(self.config, outf)
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152
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153
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154 class TomoDetectorConfig(YamlDetectorConfig):
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155 def __init__(self, config_source):
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156 validate_yaml_pars = ['detector',
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157 'lens_magnification',
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158 'detector:pixels:rows',
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159 'detector:pixels:columns',
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160 *[f'detector:pixels:size:{i}' for i in range(2)]]
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diff changeset
161 super().__init__(config_source, validate_yaml_pars=validate_yaml_pars)
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162
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diff changeset
163 @property
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diff changeset
164 @cache
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165 def lens_magnification(self):
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166 lens_magnification = self.config.get('lens_magnification')
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167 if not isinstance(lens_magnification, (int, float)) or lens_magnification <= 0.:
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diff changeset
168 illegal_value(lens_magnification, 'lens_magnification', 'detector file')
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diff changeset
169 logging.warning('Using default lens_magnification value of 1.0')
49
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170 return(1.0)
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171 else:
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172 return(lens_magnification)
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173
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174 @property
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175 @cache
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176 def pixel_size(self):
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177 pixel_size = self.config['detector'].get('pixels').get('size')
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178 if isinstance(pixel_size, (int, float)):
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179 if pixel_size <= 0.:
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180 illegal_value(pixel_size, 'pixel_size', 'detector file')
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181 return(None)
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182 pixel_size /= self.lens_magnification
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183 elif isinstance(pixel_size, list):
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184 if ((len(pixel_size) > 2) or
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185 (len(pixel_size) == 2 and pixel_size[0] != pixel_size[1])):
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186 illegal_value(pixel_size, 'pixel size', 'detector file')
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187 return(None)
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188 elif not is_num(pixel_size[0], 0.):
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189 illegal_value(pixel_size, 'pixel size', 'detector file')
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190 return(None)
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191 else:
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192 pixel_size = pixel_size[0]/self.lens_magnification
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193 else:
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194 illegal_value(pixel_size, 'pixel size', 'detector file')
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195 return(None)
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196
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
197 return(pixel_size)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
198
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
199 @property
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
200 @cache
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
201 def dimensions(self):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
202 pixels = self.config['detector'].get('pixels')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
203 num_rows = pixels.get('rows')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
204 if not is_int(num_rows, 1):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
205 illegal_value(num_rows, 'rows', 'detector file')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
206 return(None)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
207 num_columns = pixels.get('columns')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
208 if not is_int(num_columns, 1):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
209 illegal_value(num_columns, 'columns', 'detector file')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
210 return(None)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
211 return(num_rows, num_columns)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
212
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
213
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
214 class EDDDetectorConfig(YamlDetectorConfig):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
215 def __init__(self, config_source):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
216 validate_yaml_pars = ['num_bins',
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
217 'max_E',
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
218 # 'angle', # KLS leave this out for now -- I think it has to do with the relative geometry of sample, beam, and detector (not a property of the detector on its own), so may not belong here in the DetectorConfig object?
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
219 'tth_angle',
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
220 'slope',
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
221 'intercept']
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
222 super().__init__(config_source, validate_yaml_pars=validate_yaml_pars)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
223
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
224 @property
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
225 @cache
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
226 def num_bins(self):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
227 try:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
228 num_bins = int(self.config['num_bins'])
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
229 if num_bins <= 0:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
230 raise(ValueError)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
231 else:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
232 return(num_bins)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
233 except:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
234 illegal_value(self.config['num_bins'], 'num_bins')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
235 @property
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
236 @cache
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
237 def max_E(self):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
238 try:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
239 max_E = float(self.config['max_E'])
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
240 if max_E <= 0:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
241 raise(ValueError)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
242 else:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
243 return(max_E)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
244 except:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
245 illegal_value(self.config['max_E'], 'max_E')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
246 return(None)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
247
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
248 @property
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
249 def bin_energies(self):
65
f31ef7bfb430 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit d55db09b45d0b542f966cef17892858bb55d94f7"
rv43
parents: 64
diff changeset
250 return(self.slope * np.linspace(0, self.max_E, self.num_bins, endpoint=False) +
f31ef7bfb430 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit d55db09b45d0b542f966cef17892858bb55d94f7"
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parents: 64
diff changeset
251 self.intercept)
49
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
252
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
253 @property
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
254 def tth_angle(self):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
255 try:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
256 return(float(self.config['tth_angle']))
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
257 except:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
258 illegal_value(tth_angle, 'tth_angle')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
259 return(None)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
260 @tth_angle.setter
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
261 def tth_angle(self, value):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
262 try:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
263 self._config['tth_angle'] = float(value)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
264 except:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
265 illegal_value(value, 'tth_angle')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
266
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
267 @property
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
268 def slope(self):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
269 try:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
270 return(float(self.config['slope']))
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
271 except:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
272 illegal_value(slope, 'slope')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
273 return(None)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
274 @slope.setter
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
275 def slope(self, value):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
276 try:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
277 self._config['slope'] = float(value)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
278 except:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
279 illegal_value(value, 'slope')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
280
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
281 @property
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
282 def intercept(self):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
283 try:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
284 return(float(self.config['intercept']))
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
285 except:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
286 illegal_value(intercept, 'intercept')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
287 return(None)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
288 @intercept.setter
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
289 def intercept(self, value):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
290 try:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
291 self._config['intercept'] = float(value)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
292 except:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
293 illegal_value(value, 'intercept')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
294
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
295
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
296 # class HexrdDetectorConfig(YamlDetectorConfig):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
297 # def __init__(self, config_source, detector_names=[]):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
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298 # self.detector_names = detector_names
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299 # validate_yaml_pars_each_detector = [*[f'buffer:{i}' for i in range(2)],
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300 # 'distortion:function_name',
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301 # *[f'distortion:parameters:{i}' for i in range(6)],
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302 # 'pixels:columns',
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303 # 'pixels:rows',
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304 # *['pixels:size:%i' % i for i in range(2)],
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305 # 'saturation_level',
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306 # *[f'transform:tilt:{i}' for i in range(3)],
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307 # *[f'transform:translation:{i}' for i in range(3)]]
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308 # validate_yaml_pars = []
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309 # for detector_name in self.detector_names:
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310 # validate_yaml_pars += [f'detectors:{detector_name}:{par}' for par in validate_yaml_pars_each_detector]
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311
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312 # super().__init__(config_source, validate_yaml_pars=validate_yaml_pars)
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313
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314 # def validate(self):
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315 # yaml_valid = YamlDetectorConfig.validate(self)
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316 # if not yaml_valid:
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317 # return(False)
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318 # else:
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319 # hedm_instrument = HEDMInstrument(instrument_config=self.config)
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320 # for detector_name in self.detector_names:
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321 # if detector_name in hedm_instrument.detectors:
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322 # if isinstance(hedm_instrument.detectors[detector_name], PlanarDetector):
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323 # continue
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324 # else:
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325 # return(False)
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326 # else:
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327 # return(False)
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328 # return(True)
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329
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330 # class SAXSWAXSDetectorConfig(DetectorConfig):
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331 # def __init__(self, config_source):
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332 # super().__init__(config_source)
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333
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334 # @property
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335 # def ai(self):
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336 # return(self.config)
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337 # @ai.setter
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338 # def ai(self, value):
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339 # if isinstance(value, pyFAI.azimuthalIntegrator.AzimuthalIntegrator):
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340 # self.config = ai
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341 # else:
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342 # illegal_value(value, 'azimuthal integrator')
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343
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344 # # pyFAI will perform its own error-checking for the mask attribute.
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345 # mask = property(self.ai.get_mask, self.ai,set_mask)
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346
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347
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348