Mercurial > repos > rv43 > tomo

annotate detector.py @ 49:26f99fdd8d61 draft

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"planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
author rv43
date Thu, 28 Jul 2022 16:05:24 +0000
parents
children 98a83f03d91b
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rev   line source
49
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1 import logging
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2 import os
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3 import yaml
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4 from functools import cache
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5 from copy import deepcopy
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7 #from .general import *
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8 from general import illegal_value, is_int, is_num, input_yesno
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10 #from hexrd.instrument import HEDMInstrument, PlanarDetector
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11
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12 class DetectorConfig:
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13 def __init__(self, config_source):
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14 self._config_source = config_source
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16 if isinstance(self._config_source, str):
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17 self._config_file = self._config_source
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18 self._config = self._load_config_file()
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19 elif isinstance(self._config_source, dict):
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20 self._config_file = None
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21 self._config = self._config_source
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22 else:
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23 self._config_file = None
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24 self._config = False
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25
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26 self._valid = self._validate()
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27
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28 if not self.valid:
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29 logging.error(f'Cannot create a valid instance of {self.__class__.__name__} '+
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30 f'from {self._config_source}')
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31
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32 def __repr__(self):
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33 return(f'{self.__class__.__name__}({self._config_source.__repr__()})')
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34 def __str__(self):
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35 return(f'{self.__class__.__name__} generated from {self._config_source}')
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36
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37 @property
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38 def config_file(self):
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39 return(self._config_file)
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40
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41 @property
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42 def config(self):
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43 return(deepcopy(self._config))
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44
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45 @property
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46 def valid(self):
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47 return(self._valid)
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48
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49 def load_config_file(self):
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50 raise(NotImplementedError)
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51
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52 def validate(self):
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53 raise(NotImplementedError)
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54
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55 def _load_config_file(self):
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56 return(self.load_config_file())
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57
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58 def _validate(self):
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59 if not self.config:
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60 logging.error('A configuration must be loaded prior to calling Detector._validate')
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61 return(False)
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62 else:
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63 return(self.validate())
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64
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65 def _write_to_file(self, out_file):
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66 out_file = os.path.abspath(out_file)
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67
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68 current_config_valid = self.validate()
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69 if not current_config_valid:
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70 write_invalid_config = input_yesno(s=f'This {self.__class__.__name__} is currently '+
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71 f'invalid. Write the configuration to {out_file} anyways?', default='no')
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72 if not write_invalid_config:
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73 logging.info('In accordance with user input, the invalid configuration will '+
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74 f'not be written to {out_file}')
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75 return
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76
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77 if os.access(out_file, os.W_OK):
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78 if os.path.exists(out_file):
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79 overwrite = input_yesno(s=f'{out_file} already exists. Overwrite?', default='no')
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80 if overwrite:
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81 self.write_to_file(out_file)
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82 else:
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83 logging.info(f'In accordance with user input, {out_file} will not be '+
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84 'overwritten')
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85 else:
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86 self.write_to_file(out_file)
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87 else:
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88 logging.error(f'Insufficient permissions to write to {out_file}')
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89
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90 def write_to_file(self, out_file):
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91 raise(NotImplementedError)
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92
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93 class YamlDetectorConfig(DetectorConfig):
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94 def __init__(self, config_source, validate_yaml_pars=[]):
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95 self._validate_yaml_pars = validate_yaml_pars
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96 super().__init__(config_source)
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97
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98 def load_config_file(self):
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99 if not os.path.splitext(self._config_file)[1]:
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100 if os.path.isfile(f'{self._config_file}.yml'):
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101 self._config_file = f'{self._config_file}.yml'
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102 if os.path.isfile(f'{self._config_file}.yaml'):
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103 self._config_file = f'{self._config_file}.yaml'
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104 if not os.path.isfile(self._config_file):
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105 logging.error(f'Unable to load {self._config_file}')
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106 return(False)
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107 with open(self._config_file, 'r') as infile:
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108 config = yaml.safe_load(infile)
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109 if isinstance(config, dict):
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110 return(config)
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111 else:
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112 logging.error(f'Unable to load {self._config_file} as a dictionary')
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113 return(False)
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114
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115 def validate(self):
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116 if not self._validate_yaml_pars:
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117 logging.warning('There are no required parameters provided for this detector '+
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118 'configuration')
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119 return(True)
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120
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121 def validate_nested_pars(config, validate_yaml_par):
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122 yaml_par_levels = validate_yaml_par.split(':')
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123 first_level_par = yaml_par_levels[0]
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124 try:
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125 first_level_par = int(first_level_par)
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126 except:
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127 pass
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128 try:
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129 next_level_config = config[first_level_par]
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130 if len(yaml_par_levels) > 1:
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131 next_level_pars = ':'.join(yaml_par_levels[1:])
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132 return(validate_nested_pars(next_level_config, next_level_pars))
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133 else:
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134 return(True)
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135 except:
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diff changeset
136 return(False)
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diff changeset
137
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138 pars_missing = [p for p in self._validate_yaml_pars
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diff changeset
139 if not validate_nested_pars(self.config, p)]
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140 if len(pars_missing) > 0:
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141 logging.error(f'Missing item(s) in configuration: {", ".join(pars_missing)}')
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142 return(False)
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143 else:
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144 return(True)
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145
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146 def write_to_file(self, out_file):
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147 with open(out_file, 'w') as outf:
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148 yaml.dump(self.config, outf)
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149
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150
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151 class TomoDetectorConfig(YamlDetectorConfig):
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152 def __init__(self, config_source):
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153 validate_yaml_pars = ['detector',
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154 'lens_magnification',
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diff changeset
155 'detector:pixels:rows',
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156 'detector:pixels:columns',
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157 *[f'detector:pixels:size:{i}' for i in range(2)]]
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158 super().__init__(config_source, validate_yaml_pars=validate_yaml_pars)
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159
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diff changeset
160 @property
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diff changeset
161 @cache
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162 def lens_magnification(self):
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163 lens_magnification = self.config.get('lens_magnification')
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164 if not isinstance(lens_magnification, (int, float)) or lens_magnification <= 0.:
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diff changeset
165 illegal_value(lens_magnification, 'lens_magnification', 'detector file')
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166 logging.warning('Using default lens_magnification value of 1.0')
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diff changeset
167 return(1.0)
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168 else:
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diff changeset
169 return(lens_magnification)
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170
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diff changeset
171 @property
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172 @cache
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173 def pixel_size(self):
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174 pixel_size = self.config['detector'].get('pixels').get('size')
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175 if isinstance(pixel_size, (int, float)):
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diff changeset
176 if pixel_size <= 0.:
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177 illegal_value(pixel_size, 'pixel_size', 'detector file')
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178 return(None)
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179 pixel_size /= self.lens_magnification
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180 elif isinstance(pixel_size, list):
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181 if ((len(pixel_size) > 2) or
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182 (len(pixel_size) == 2 and pixel_size[0] != pixel_size[1])):
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183 illegal_value(pixel_size, 'pixel size', 'detector file')
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184 return(None)
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185 elif not is_num(pixel_size[0], 0.):
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diff changeset
186 illegal_value(pixel_size, 'pixel size', 'detector file')
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187 return(None)
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188 else:
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189 pixel_size = pixel_size[0]/self.lens_magnification
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190 else:
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diff changeset
191 illegal_value(pixel_size, 'pixel size', 'detector file')
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diff changeset
192 return(None)
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193
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diff changeset
194 return(pixel_size)
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195
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diff changeset
196 @property
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197 @cache
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diff changeset
198 def dimensions(self):
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199 pixels = self.config['detector'].get('pixels')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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200 num_rows = pixels.get('rows')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
201 if not is_int(num_rows, 1):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
202 illegal_value(num_rows, 'rows', 'detector file')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
203 return(None)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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204 num_columns = pixels.get('columns')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
205 if not is_int(num_columns, 1):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
206 illegal_value(num_columns, 'columns', 'detector file')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
207 return(None)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
208 return(num_rows, num_columns)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
209
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
210
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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211 class EDDDetectorConfig(YamlDetectorConfig):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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212 def __init__(self, config_source):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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213 validate_yaml_pars = ['num_bins',
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
214 'max_E',
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
215 # 'angle', # KLS leave this out for now -- I think it has to do with the relative geometry of sample, beam, and detector (not a property of the detector on its own), so may not belong here in the DetectorConfig object?
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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216 'tth_angle',
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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217 'slope',
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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218 'intercept']
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
219 super().__init__(config_source, validate_yaml_pars=validate_yaml_pars)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
220
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
221 @property
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
222 @cache
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
223 def num_bins(self):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
224 try:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
225 num_bins = int(self.config['num_bins'])
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
226 if num_bins <= 0:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
227 raise(ValueError)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
228 else:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
229 return(num_bins)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
230 except:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
231 illegal_value(self.config['num_bins'], 'num_bins')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
232 @property
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
233 @cache
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
234 def max_E(self):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
235 try:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
236 max_E = float(self.config['max_E'])
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
237 if max_E <= 0:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
238 raise(ValueError)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
239 else:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
240 return(max_E)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
241 except:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
242 illegal_value(self.config['max_E'], 'max_E')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
243 return(None)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
244
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
245 @property
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
246 def bin_energies(self):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
247 return(self.slope * np.linspace(0, self.max_E, self.num_bins, endpoint=False) +
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
248 self.intercept)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
249
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
250 @property
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
251 def tth_angle(self):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
252 try:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
253 return(float(self.config['tth_angle']))
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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diff changeset
254 except:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
255 illegal_value(tth_angle, 'tth_angle')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
256 return(None)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
257 @tth_angle.setter
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
258 def tth_angle(self, value):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
259 try:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
260 self._config['tth_angle'] = float(value)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
261 except:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
262 illegal_value(value, 'tth_angle')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
263
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
264 @property
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
265 def slope(self):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
266 try:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
267 return(float(self.config['slope']))
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
268 except:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
269 illegal_value(slope, 'slope')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
270 return(None)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
271 @slope.setter
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
272 def slope(self, value):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
273 try:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
274 self._config['slope'] = float(value)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
275 except:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
276 illegal_value(value, 'slope')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
277
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
278 @property
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
279 def intercept(self):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
280 try:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
281 return(float(self.config['intercept']))
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
282 except:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
283 illegal_value(intercept, 'intercept')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
284 return(None)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
285 @intercept.setter
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
286 def intercept(self, value):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
287 try:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
288 self._config['intercept'] = float(value)
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
289 except:
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
290 illegal_value(value, 'intercept')
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
291
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
rv43
parents:
diff changeset
292
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
293 # class HexrdDetectorConfig(YamlDetectorConfig):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
294 # def __init__(self, config_source, detector_names=[]):
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
295 # self.detector_names = detector_names
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
296 # validate_yaml_pars_each_detector = [*[f'buffer:{i}' for i in range(2)],
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
297 # 'distortion:function_name',
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
diff changeset
298 # *[f'distortion:parameters:{i}' for i in range(6)],
26f99fdd8d61 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 4f7738d02f4a3fd91373f43937ed311b6fe11a12"
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parents:
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299 # 'pixels:columns',
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300 # 'pixels:rows',
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301 # *['pixels:size:%i' % i for i in range(2)],
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302 # 'saturation_level',
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303 # *[f'transform:tilt:{i}' for i in range(3)],
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304 # *[f'transform:translation:{i}' for i in range(3)]]
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305 # validate_yaml_pars = []
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306 # for detector_name in self.detector_names:
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307 # validate_yaml_pars += [f'detectors:{detector_name}:{par}' for par in validate_yaml_pars_each_detector]
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308
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309 # super().__init__(config_source, validate_yaml_pars=validate_yaml_pars)
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310
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311 # def validate(self):
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312 # yaml_valid = YamlDetectorConfig.validate(self)
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313 # if not yaml_valid:
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314 # return(False)
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315 # else:
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316 # hedm_instrument = HEDMInstrument(instrument_config=self.config)
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317 # for detector_name in self.detector_names:
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318 # if detector_name in hedm_instrument.detectors:
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319 # if isinstance(hedm_instrument.detectors[detector_name], PlanarDetector):
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320 # continue
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321 # else:
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322 # return(False)
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323 # else:
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324 # return(False)
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325 # return(True)
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326
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327 # class SAXSWAXSDetectorConfig(DetectorConfig):
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328 # def __init__(self, config_source):
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329 # super().__init__(config_source)
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330
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331 # @property
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332 # def ai(self):
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333 # return(self.config)
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334 # @ai.setter
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335 # def ai(self, value):
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336 # if isinstance(value, pyFAI.azimuthalIntegrator.AzimuthalIntegrator):
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337 # self.config = ai
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338 # else:
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339 # illegal_value(value, 'azimuthal integrator')
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340
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341 # # pyFAI will perform its own error-checking for the mask attribute.
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342 # mask = property(self.ai.get_mask, self.ai,set_mask)
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343
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344
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345