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annotate plot_smb_tiff.xml @ 3:6be076b081c4 draft

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planemo upload for repository https://github.com/rolfverberg/galaxytools commit b5d7c209a0ba024789ccfb89ec874e8b9c280149-dirty
author rv43
date Mon, 13 Mar 2023 15:49:12 +0000
parents 576071826197
children
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6be076b081c4 planemo upload for repository https://github.com/rolfverberg/galaxytools commit b5d7c209a0ba024789ccfb89ec874e8b9c280149-dirty
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1 <tool id="plot_smb_tiff" name="Plot SMB Image" version="0.1.3" python_template_version="3.9">
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2 <description>Plot an image for the SMB file schema</description>
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3 <requirements>
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4 <requirement type="package" version="3.5.2">matplotlib</requirement>
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5 </requirements>
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6 <command detect_errors="exit_code"><![CDATA[
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7 $__tool_directory__/plot_smb_tiff.py
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8 --output_file 'image.jpg'
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9 --cycle '$cycle'
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10 --station '$station'
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11 --btr '$btr'
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12 --sample '$sample'
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13 --scan_number $scan_number
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14 --image_index $image_index
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15 -l '$log'
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16 ]]></command>
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17 <inputs>
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18 <param name="cycle" type="text" optional="false" label="Run cycle"/>
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19 <param name="station" type="select" label="Beamline station">
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20 <option value="id1a3">id1a3</option>
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21 <option value="id3a">id3a</option>
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22 </param>
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23 <param name="btr" type="text" optional="false" label="BTR"/>
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24 <param name="sample" type="text" optional="false" label="Sample name"/>
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25 <param name="scan_number" type='integer' value="-1" label="SPEC scan number"/>
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26 <param name="image_index" type='integer' value="0" min="0" label="Image index relative the first"/>
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27 </inputs>
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28 <outputs>
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29 <data name="output_file" format="jpg" label="Plot" from_work_dir="image.jpg"/>
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30 <data name="log" format="txt" label="Log"/>
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31 </outputs>
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32 <help><![CDATA[
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33 Plot an image for the SMB file schema
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34 ]]></help>
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35 <citations>
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36 <citation type="bibtex">
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37 @misc{github_files,
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38 author = {Verberg, Rolf},
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39 year = {2022},
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40 }
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41 </citation>
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42 </citations>
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43 </tool>