Mercurial > repos > rv43 > plot_smb_tiff

annotate plot_smb_tiff.xml @ 0:9f331fb5be2c draft

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planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
author rv43
date Fri, 10 Mar 2023 20:57:05 +0000
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children 226bc89c5552
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9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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1 <tool id="plot_smb_tiff" name="Plot SMB Image" version="0.1.0" python_template_version="3.9">
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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2 <description>Plot an image for the SMB file schema</description>
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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3 <command detect_errors="exit_code"><![CDATA[
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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4 $__tool_directory__/plot_smb_tiff.py
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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5 --cycle '$cycle'
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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6 --station '$station'
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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7 --btr '$btr'
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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8 --sample '$sample'
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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9 --scan_number $scan_number
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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10 --image_index $image_index
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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11 -l '$log'
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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12 ]]></command>
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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13 <inputs>
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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14 <param name="cycle" type="text" optional="false" label="Run cycle"/>
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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15 <param name="station" type="select" label="Beamline station">
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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16 <option value="id1a3">id1a3</option>
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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17 <option value="id3a">id3a</option>
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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18 </param>
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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19 <param name="btr" type="text" optional="false" label="BTR"/>
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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20 <param name="sample" type="text" optional="false" label="Sample name"/>
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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21 <param name="scan_number" type='integer' value="-1" label="SPEC scan number"/>
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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22 <param name="image_index" type='integer' value="0" min="0" label="Image index relative the first"/>
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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23 </inputs>
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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24 <outputs>
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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25 <data name="log" format="txt" label="Log"/>
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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26 </outputs>
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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27 <help><![CDATA[
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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28 Plot an image for the SMB file schema
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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29 ]]></help>
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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30 <citations>
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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31 <citation type="bibtex">
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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32 @misc{github_files,
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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33 author = {Verberg, Rolf},
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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34 year = {2022},
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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35 }
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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36 </citation>
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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37 </citations>
9f331fb5be2c planemo upload for repository https://github.com/rolfverberg/galaxytools commit ec74ae97e0ca220d04cb668baa656358abf190e9
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38 </tool>